Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1327 ATGCGCTCTCCCAAACACAAAACTCAAAAACCCGTTTCCAAACCGGAGAGCGCCACCAATGCTACCGCCTCTTCCACTTTCTTTGATATCTACGGTCCAGAGGCTAAGGCTGAAGTTGTTTTCAAGACTCCCGATGCCGACTCAACGTTGAATCTGCAAGACGTTCAAGGACTTGTAACTTGGGTGCTTGCTGAAGGATTCATGCCATCGTGGATTTTTATTAAAAACAAACCCCTGATTCCAAAAGTGGTTATGCTCTATGTCCCAGGCCTTGATGCAGCTTTGTACATGTCACAATCTAAAATACTTAGTGGTTTGAAAGAATTCTGTGGCAATCCAAGGGCAGTTTTAGCTCTTAGCTGTGTATCAGATAGAATGCAGACGATTGATGCACTCCTGACATGCAAGCTCAAAAGAAAGAGAAATGAAGTTGATTCAGCATTGAAAAAACATGATCAGACATCTGAACAAGGGGGTTGTAGTGGTGGTTCAAATAATTCATCGTCCATGGAAGTTTTGAAAGATTTACCTTTCCCCATTACATATTACACACTCACAGCAAAGGAACTGGAAGATAATGGATATTGTCATGATCAACCAGGTTTTGTTTCGACTCTTCCTGCTCCTTCAGGATGTCGCCTCTATGAAATGTTGGCACTTGATTGCGAGATGTGTGTCACAAGCGAGGGGTTTGAGCTCACAAGAATTAGTCTGGTAGATATTAAAGGACAGGTCGTGTTAGATAAATTGGTTAAGCCATCAAATCGTATCATTGATTACAACACTAGGTATAGTGGAATCACCTGTGAGATGTTGAATGGGGTGACTACAGGTCTGAAGGATGTTCAGGAAGATTTTCTGAAGCTGGTTTACAAAGAGACCATCCTAGTCGGACATTCATTGGAGAATGATTTGTTAGCTTTGAAGATCTCTCATGATTTGGTGATTGATACTGCAGTATTATACAAGCACCCTCGTGGTGCATCTTATAAAACTGCTCTTCGAGTGCTCACTAGGAGATTTCTTTCTAGGGAGATACAGGAATCAAGAAATGGACATGACAGCATTGAAGATGCAAGAGCTGCTATGGAGCTGGCACTGTTAAAGATCAGACATGGACCTGAATTTGGTTCACCTCCGTCATTTATGCGGAAGAAGCTCCTTACAGTTTTGAATGATTATGGCAAAACTTCCTCTTTCATTGATGATATTTCTATAGTTAGGCGATACACTTCTGAGGCATCCCATGCGTTTCCTGTGTCTTCTGATGTTGAAGCTCTTTCAAAGGCCAAAAAGGAGGTAAAGAATGATAAGGTACACTTTGTTTGGACTCAATTCTCAGAATTGAATTCCTATTTCAAGAAACAAGCAGAGGACACGGACAAGTTGAATGCAAAACTGGCAGAGATGATATCATTGCTTACTTGTAATAAGAAGTCTACCACACCAAAAGGCATCAAGTTTAGTGTGACTTCTGAATTGAAGGACATACTAACTTGCATTGACACTAGAATCCGAAGCCTCTACCATGAATTGCCTGCTAATACTATGCTTATAATTTGCACAGGTCATGGAGACACAGCCATTGTCCATAGATTGAGGAAAATGCTCAGAGAGCAGATTGAAACCACAGTAAGCCGTGAGAAACTTGTAAAAGTCTTGGAAGAGCTCCAGGCCCAGGCTGAGGTAGCTTTGTGTTTTGTGGGTGTGAAGCATTGA 1719 0.4159 MRSPKHKTQKPVSKPESATNATASSTFFDIYGPEAKAEVVFKTPDADSTLNLQDVQGLVTWVLAEGFMPSWIFIKNKPLIPKVVMLYVPGLDAALYMSQSKILSGLKEFCGNPRAVLALSCVSDRMQTIDALLTCKLKRKRNEVDSALKKHDQTSEQGGCSGGSNNSSSMEVLKDLPFPITYYTLTAKELEDNGYCHDQPGFVSTLPAPSGCRLYEMLALDCEMCVTSEGFELTRISLVDIKGQVVLDKLVKPSNRIIDYNTRYSGITCEMLNGVTTGLKDVQEDFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGASYKTALRVLTRRFLSREIQESRNGHDSIEDARAAMELALLKIRHGPEFGSPPSFMRKKLLTVLNDYGKTSSFIDDISIVRRYTSEASHAFPVSSDVEALSKAKKEVKNDKVHFVWTQFSELNSYFKKQAEDTDKLNAKLAEMISLLTCNKKSTTPKGIKFSVTSELKDILTCIDTRIRSLYHELPANTMLIICTGHGDTAIVHRLRKMLREQIETTVSREKLVKVLEELQAQAEVALCFVGVKH* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1327 572 Pfam Exonuclease 219 365 IPR013520 -
Vvi18g1327 572 Coils Coil 137 157 - -
Vvi18g1327 572 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g1327 572 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 24 393 IPR047021 GO:0004527
Vvi18g1327 572 Gene3D - 215 375 IPR036397 GO:0003676
Vvi18g1327 572 MobiDBLite consensus disorder prediction 146 168 - -
Vvi18g1327 572 FunFam RNA exonuclease NEF-sp 213 377 - -
Vvi18g1327 572 CDD REX1_like 218 367 IPR034922 -
Vvi18g1327 572 SMART exoiiiendus 216 375 IPR013520 -
Vvi18g1327 572 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
Vvi18g1327 572 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1327 Vvi-Chr18 13418570 13429657 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1327 K14570 - vvi:100242014 1127.46