Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1306 ATGTTGCCGGATTCATCTTCAAGCCAGCCAGAGTTTGATTACTTGTTCAAGTTGCTGTTGATTGGGGATTCAGGTGTTGGGAAGAGTACCCTTCTCTTGAGTTTCACCTCCAATACCTTTGAAGATCTTTCTCCCACAATTGGTGTGGATTTTAAGGTGAAACATGTTAATATTGGGGGGAAGAAGTTGAAGCTTGCAATTTGGGACACAGCTGGACAGGAGAGATTTAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGGCTAAAGAAATTGACCTGTACTCAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAATATGGATGCCTTTTTCTCGAATGCAGTGCAAAAACTCGGGTAAATGTAGAGCAATGCTTTGAGGAGCTTGTTTTGAAGATTTTGGAAACACCAAGTCTTCTGGCTGAGGGTTCAAGTGGCGTAAGAAAGAACATCTTTAAGCAGAAACCTCCGGAATCTGATGCGTCAACCAGTGGGTGTTGCTGA 636 0.4214 MLPDSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLLAEGSSGVRKNIFKQKPPESDASTSGCC* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1306 211 ProSiteProfiles small GTPase Rab1 family profile. 11 211 - -
Vvi18g1306 211 Gene3D - 9 211 IPR027417 -
Vvi18g1306 211 ProSiteProfiles small GTPase Ras family profile. 8 211 IPR001806 GO:0003924|GO:0005525
Vvi18g1306 211 SMART arf_sub_2 5 181 - -
Vvi18g1306 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
Vvi18g1306 211 SMART rab_sub_5 16 180 - -
Vvi18g1306 211 SMART ran_sub_2 21 206 - -
Vvi18g1306 211 CDD Rab18 16 177 - -
Vvi18g1306 211 FunFam Ras-related protein RABC1 9 211 - -
Vvi18g1306 211 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Vvi18g1306 211 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Vvi18g1306 211 SMART ras_sub_4 13 180 - -
Vvi18g1306 211 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Vvi18g1306 211 NCBIfam small GTP-binding protein domain 14 172 IPR005225 GO:0005525
Vvi18g1306 211 PANTHER RAS-RELATED PROTEIN RAB 15 186 - -
Vvi18g1306 211 PRINTS Transforming protein P21 ras signature 16 37 - -
Vvi18g1306 211 PRINTS Transforming protein P21 ras signature 120 133 - -
Vvi18g1306 211 PRINTS Transforming protein P21 ras signature 155 177 - -
Vvi18g1306 211 PRINTS Transforming protein P21 ras signature 56 78 - -
Vvi18g1306 211 PRINTS Transforming protein P21 ras signature 38 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1306 Vvi-Chr18 13134037 13151873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1306 17 113 EF-hand Containing Proteins AT5G27540 25.773 5.71e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1306 K07910 - vvi:100266035 423.32