Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1299 | ATGGAAATGGTGGGACAAGGAGGTGAGGAGCTGGAGTTCTGCTTTGAGAGGCTTGTGATGGGTGGGGACGGAAGAGGGGGGATGGACGGAGGCGGTGTTGGGGTCATTACTGAGTGGAAGGATGTCCCTATGGAGCTTCTGCTGCGGATTGTTGCGCTCGTCGATGATCGGACAGTGATTATGGCTTCTGGGGTGTGCAGTGGATGGAGAGATGCTATTTGCTTGGGCCTTACCCATCTCTCCCTTTCTTGGTGCAAAAACAACATGAACAACTTGGTTCTATCGCTTGCTCCCAAATTCACAAAATTGCAGGCTCTAACACTGCGTCAAGATAAACCACAGCTGGAGGATAAAGCTGTGGAGATTATTGCAAATTATTGCCATGATCTGCAGGATTTGGATCTCAGTAAAAGCTTCAAGCTTAGTGATTCCTCCCTTTATGCCTTGGCTCATGGTTGTCCTAATCTTACTAAACTTAACATCAGTGGATGTACGGCATTCAGTGATGCTGCTCTTGCACATCTGACCAGTTTCTGCAGAAGATTAAAAATTTTAAATCTTTGTGGATGTGGGAAAGCTGCATCTAATAGGGCATTGCAGGCTATTGGACGGAACTGCAGTCAGCTGCAATCTTTGAATCTGGGGTGGTGTGAGGATGTGAGTGATGCTGGAGTGATGAGTTTAGCATATGGATGCCCTGATCTCAGGGCGCTTGACTTGTGTGGTTGTGTTCATATTACAGATGAGAGCGTAATTGCTTTGGCAAACAGGTGCCTTCATCTGAGATCCCTTGGCCTGTACTTCTGTCAGAACATTACAGACAAAGCAATGTATTCCCTGGCCCAGAGCCGTGTAAAGAACAAGCATGAAATGTGGGAATCCATGAAGAGCAGGTACAGCGAGGAAGGGCTTATGAATCTCAATATCAGCCAGTGCACAGCCCTCACACCTCCTGCTGTTCAAGCTGTATGTGATTCATTTCCTGCACTTCACACTTGTCCAGGAAGGCATTCGCTAATCATAAGTGGCTGTTTGAGCTTAACATCGGTGCATTGTGCCTGTGGTGTCCAAGCACACCGCACAGCCAGCCAGCTTTCACACCCAGCTCATTAA | 1113 | 0.4762 | MEMVGQGGEELEFCFERLVMGGDGRGGMDGGGVGVITEWKDVPMELLLRIVALVDDRTVIMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLEDKAVEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLTSFCRRLKILNLCGCGKAASNRALQAIGRNCSQLQSLNLGWCEDVSDAGVMSLAYGCPDLRALDLCGCVHITDESVIALANRCLHLRSLGLYFCQNITDKAMYSLAQSRVKNKHEMWESMKSRYSEEGLMNLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACGVQAHRTASQLSHPAH* | 371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1299 | 370 | SUPERFAMILY | F-box domain | 39 | 80 | IPR036047 | GO:0005515 | |
| Vvi18g1299 | 370 | CDD | F-box_AtSKP2-like | 38 | 85 | - | - | |
| Vvi18g1299 | 370 | Gene3D | - | 36 | 75 | - | - | |
| Vvi18g1299 | 370 | SUPERFAMILY | RNI-like | 73 | 330 | - | - | |
| Vvi18g1299 | 370 | PANTHER | UNCHARACTERIZED | 67 | 333 | - | - | |
| Vvi18g1299 | 370 | Gene3D | Ribonuclease Inhibitor | 76 | 367 | IPR032675 | - | |
| Vvi18g1299 | 370 | Pfam | Leucine Rich repeat | 206 | 229 | IPR001611 | GO:0005515 | |
| Vvi18g1299 | 370 | Pfam | Leucine Rich repeat | 258 | 281 | IPR001611 | GO:0005515 | |
| Vvi18g1299 | 370 | Pfam | Leucine Rich repeat | 153 | 172 | IPR001611 | GO:0005515 | |
| Vvi18g1299 | 370 | Pfam | Leucine Rich repeat | 232 | 255 | IPR001611 | GO:0005515 | |
| Vvi18g1299 | 370 | Pfam | F-box domain | 39 | 74 | IPR001810 | GO:0005515 | |
| Vvi18g1299 | 370 | FunFam | F-box protein SKP2B | 74 | 294 | - | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 258 | 283 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 301 | 326 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 206 | 231 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 100 | 126 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 127 | 152 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 153 | 178 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 232 | 257 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 179 | 205 | IPR006553 | - | |
| Vvi18g1299 | 370 | SMART | LRR_CC_2 | 74 | 99 | IPR006553 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1299 | K03875 | - | vvi:100255759 | 726.472 |