Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1298 ATGGCTAAAGTTTGTTGGCCTTACTTTGATCCTGAGTATGAGAACTTGAGCATGAGAATAAATCCTCCAAGGGTGTCTGTAGACAATTTAAGTTGCAGCGACTGTACTCTGATCAAGGTTGACAGCATGAACAAACCAGGAATACTGCTGGAAGTGGTACAAATCCTAACAGACATTGACCTCCTAATTACCAAAGCTTACATCTCTTCTGATGGCGGATGGTTCATGGATGTGTTTCATGTCACCGATCAACAAGGAAACAAAATTACAGATGGAAAAATCATCGACTACATTGAGAAGGCTTTAGGACCAAAGGGAGACACCATAGATGGGGTCAAGACTTGGCCAGGAAAACGAGTTGGGGTGCACTCTGTTGGTGATCACACAGCCATTGAGCTCATTGGCAAGGACCGCCCAGGCCTCTTATCAGAAATCTCTGCTGTTTTAGCTGACCTCCACTTTAATGTGGTAGGTGCTGAAGTTTGGACACACAACAGACGAATCGCATGTGTTGTCTATGTCAATGATGATGCCACATGCCGTGCTGTGGATGACCCAACTCGATTATCTGTTATGGAGGAGCAACTCAAGAATGTGTTACGTGGATGCGAGGATGATGACAAAGTGGCTCGAACCAGTTTCTCCATGGGGTTCACTCATGTTGATCGGAGGCTTCACCAGATGTTGTTTGCAGACAGGGATTATGAAGGTGGTGGAACAACAATTGAAGCTGATTATCCTCCCTCCTTCAAACCAAAAATCACAATTGACCGTTGTGAGGATAAGGGATACTCAGCGGTTAGTGTCATGTGTAAAGATCGGCCAAAACTGATGTTTGACATTGTGTGCACACTCACAGATATGCAATATGTTGTTTTCCATGCCAGCATTTCATCCGATGGTCCCTATGCATCACAGGAGTATTTTATTCGTCACATGGATGGTTGCACACTTGATAATGAAGGAGAGAAGGAAAGGGTCATCAAATGTCTTGAAGCTGCAATTCGACGAAGAGTAAGCGAGGGTTTAAGCCTGGAGCTCTGTGCAAAGGATAGAGTAGGCTTGTTATCCGAAGTGACAAGGGTTCTCCGAGAACATGGGTTGTCAGTTACCAGAGCGGGCGTCTCAACAGTTGGAGAGCAAGCAATGAATGTTTTCTACGTGAGAGATGCTTCTGGAAAACCAGTGGACATGAAGACCATAGAAGCGCTTCGTAAAGAGATCGGACACACTATGATGCTTAACGTGAAGAAGGAACCATCCAGTGCTAAGACACCTGAGGCTAGCGGATGGGCCAAGACGAGCTTCTTCTTCGGAAGCCTGTTCGAAAGGCAACGCTCTCGATATGGAATAACTTAA 1359 0.454 MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDIDLLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRVGVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATCRAVDDPTRLSVMEEQLKNVLRGCEDDDKVARTSFSMGFTHVDRRLHQMLFADRDYEGGGTTIEADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHASISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRVLREHGLSVTRAGVSTVGEQAMNVFYVRDASGKPVDMKTIEALRKEIGHTMMLNVKKEPSSAKTPEASGWAKTSFFFGSLFERQRSRYGIT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1298 452 Gene3D - 128 209 - -
Vvi18g1298 452 ProSiteProfiles ACT domain profile. 130 214 IPR002912 -
Vvi18g1298 452 CDD ACT_ACR_4 342 413 - -
Vvi18g1298 452 ProSiteProfiles ACT domain profile. 344 421 IPR002912 -
Vvi18g1298 452 SUPERFAMILY ACT-like 340 409 IPR045865 -
Vvi18g1298 452 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 10 417 IPR040217 -
Vvi18g1298 452 FunFam ACT domain repeat 6 342 420 - -
Vvi18g1298 452 CDD ACT_ACR_3 264 338 - -
Vvi18g1298 452 CDD ACT_ACR_1 35 106 - -
Vvi18g1298 452 ProSiteProfiles ACT domain profile. 37 112 IPR002912 -
Vvi18g1298 452 Pfam ACT domain 345 404 IPR002912 -
Vvi18g1298 452 Pfam ACT domain 130 200 IPR002912 -
Vvi18g1298 452 SUPERFAMILY ACT-like 32 109 IPR045865 -
Vvi18g1298 452 SUPERFAMILY ACT-like 125 201 IPR045865 -
Vvi18g1298 452 CDD ACT_ACR_2 129 202 - -
Vvi18g1298 452 Gene3D - 339 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1298 Vvi-Chr18 13030439 13036112 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1298 - - vri:117906999 917.916