Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1296 ATGGCGGCCTGGTTCACAAGGTCTGGAAACATTGCCCACCATGTCAAGAGAAACATGGGCTCCTTCCTCCGACCAGCTCCGACTCTGAGCGACTCTTCTTGGAGTCGTTCACCCGCATGCCTCGGAAACTCCCCCGCCCTGCTCTGGGCTGGGCGTTTGGAATCCACTAGAGCTCAGAAACTTGTTGATTCAGATTCTGAGAATGATGCCCCCCTCCGAGATGATGATCAGGCCATAGATTTTCCAGGAGGGAGGGTGATGCTTACTTCTGAAATGCAATTTATCCCAGGTTACCCTCAACAGAGGGTCCACTGTTATCATCTTATGAATAACGACGGCCAAACAAATATGTGCAGCAGTTTTGAACAGGTAAGCAAGGAAGTTGCAGTGAAGATGTACAGCGACATGATCACCCTTCAAATAATGGACACCATCTTCTATGAAGCACAGAGGCAAGGAAGAATTTCCTTTTATCTCACATCAGTTGGAGAAGAAGCCATCAACATTGCATCTGCAGCTGCACTCTCTCCAGATGATATTGTCATGGCACAGTACCGGGAGCCTGGAGTTCTGCTGTGGCGTGGTTTCACACTGCAAGAATTTGCCAACCAGTGTTTCGGAAACAAGGCTGATTGTGGCAAAGGCAGGCAGATGCCCATCCATTATGGGTCTAAGAAGCTCAACTACTTCACTGTGTCATCGCCCCTTGCCACACAACTTCCCCAAGCCGTGGGTGCTGCTTATTCACTTAAAATGGATAACAAGGATGCATGTGTAGTGGCATACTTTGGGGATGGTAGCACCAGTGAGGGTGATTTCCATGCCAGTCTAAATTTTGCTGCTGTGATGGAAGCTCCTGTTATTTTTCTGTGTCGCAACAATGGATGGGCCATCAGTACCCCTACATCAGAACAGTTTCGAAGTGATGGCATTGTTGTCAAGGGTCCGGCGTATGGAATCCAAAGCATCAGGGTAGATGGGAATGATGCTCTAGCTGTTCATAACGCAGTTCGTGCGGCTCGTCAAATGGCGATTCACGAACAGAGGCCTATACTAGTTGAGGCCCTTACATATCGGGTAGGACACCACTCTACATCGGATGACTCCACCAAGTATCGGCCGGTTGATGAGGTTAAGCACTGGGAAATGGGTCAAAACCCTGTAAATAGATTCAGAAAATGGGTTGAAAGGAATGGGTGGTGGAGCGAGGAAGATGAGTCTCAGCTCCGGAGCAGCATCAGGAAGCAGCTACTGCAAGCAATTCAAGTTGCAGAAAAAATGGAGAAACCCCCACTTGCAGACTTGTTCAGTGATGTTTATGATGTTCCACCATCGATCCTCTTCGAGCAGGAACAGCAGCTTAGAGAAACTATCAAGAGGCACCCACAAGACTATCCCTCTGATGTTCCTGTTTAG 1416 0.4852 MAAWFTRSGNIAHHVKRNMGSFLRPAPTLSDSSWSRSPACLGNSPALLWAGRLESTRAQKLVDSDSENDAPLRDDDQAIDFPGGRVMLTSEMQFIPGYPQQRVHCYHLMNNDGQTNMCSSFEQVSKEVAVKMYSDMITLQIMDTIFYEAQRQGRISFYLTSVGEEAINIASAAALSPDDIVMAQYREPGVLLWRGFTLQEFANQCFGNKADCGKGRQMPIHYGSKKLNYFTVSSPLATQLPQAVGAAYSLKMDNKDACVVAYFGDGSTSEGDFHASLNFAAVMEAPVIFLCRNNGWAISTPTSEQFRSDGIVVKGPAYGIQSIRVDGNDALAVHNAVRAARQMAIHEQRPILVEALTYRVGHHSTSDDSTKYRPVDEVKHWEMGQNPVNRFRKWVERNGWWSEEDESQLRSSIRKQLLQAIQVAEKMEKPPLADLFSDVYDVPPSILFEQEQQLRETIKRHPQDYPSDVPV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1296 471 CDD TPP_E1_PDC_ADC_BCADC 132 424 - -
Vvi18g1296 471 Pfam Dehydrogenase E1 component 136 430 IPR001017 GO:0016624
Vvi18g1296 471 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 96 466 IPR029061 -
Vvi18g1296 471 Gene3D - 74 469 - -
Vvi18g1296 471 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 75 469 - -
Vvi18g1296 471 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 74 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1296 Vvi-Chr18 12992564 12996540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1296 74 309 Acyl Lipid Metabolism Gene Families AT5G09300 74.153 1.44e-132 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1296 K00166 - vvi:100245451 961.059