Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1295 ATGCAACCATTTCTCAAGAAAGCTCATGGGCCTCTCGCAACCTCACTCTCCTATTATTCTAACCTCATAGAACATTGTTTCTTGCTGAAATCCTTAGACTATGCTAAATTCGTCCATGCCCAGTTGATTAAAGTCGGCTTCAATACCCATACTTTTCTGGGTAATCGCTGCCTCGATCTATTTGGAGAGCTCGAAAGGGCGCGTGATGTGTTCGACGAAATGCCCAAACGAGATGTTGTTAGTTGGAACACAATGATTTCGGGATATGTTTCATTTGGGTTATTTGATGATGCGTTCAGATTTTTCTCAGAAATGCAAAAGGCTGGCATAAGGCCTAGTGGGTTCACATATTCGACCCTATTGGAGGATTCAGTCCGGGTCTTTGAAGAAATATATCAATGGGATTCAGTGCTTTGCAATGCCATGATTTCAAGCTATGCATGGCATGGTTTTGGAGAGAATGCTTTGCAACTTTTTGTACTGACCTTGAGGGAGAACCTCAGGCCCACTGAATTCACGCTCAGCATTGTTCTGAGTGCTGTTTCCATTCTCCTTCCAGTGGATCAGGGGAGTCAAATCCATTCTTTGGTTGTCAAATCTGGTTTGGAGTCAGATGTGATTGTTGCAAGTTCACTTGTGGAAATGTATGCTAAATTTGGGTTAATTGACTCTGCCATGAAAACCTTTGCCAAGATTGGTGCCAGAGATTTGATATCTTGGAATACCATGATTATGGGCTTAGCTTATAATGGGAGAGTGAGTAAAGCCCTAGAAATTTTTAAAGAACTTCTCATAGGAGGTCCACCACCTGATGAAATTACCCTAGCTGGGGTTTTATTAGCTTGCAATGTCGGGGGTCTTGTTGATGAAGGGCTGAGTATATTCTCCTCAATGGAAAAGGAATATGGAGTCATACCAGCAATTGAGCATTATGCTTGCATTGTGGACATGATGAGTCGAGGTGGTAAACTTAAAGAAGCAATGGATATTGTAGAATTAATGCCTCATGAACCCAGTGGTTTGATTTGGGGATCACTACTTTGTGCTTGTGAAATTTATGGAGACTTGAGATTCACTGAGAGAGTTGCAGAGAGGGTTATGGAGTTGGAACCACAGTCGTCTTTACCTTATTTGGTTTTAGCTCAGGCATATGAGATGAGGGGCAGATGGGAGAGCCTGGTTAGAGTCAGGAGGGCTATGAAAGAGAAAGGTGTTAGGAAGGTGATTGGATGCAGTTGGATTGGGATAAAAAACCATGTTTTTGTTTTTAAGGAAAATCAATTATTGCACATCGGAGGCAAAGACATCTATTTTATTCTGAGATTACTGATTCAGGAGATCGAGGATGACGGGTATGCCTCTCAACAGTATGATAAAGTGAGGGCTGTGGGAGAGGTAGGATGA 1404 0.4224 MQPFLKKAHGPLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSWIGIKNHVFVFKENQLLHIGGKDIYFILRLLIQEIEDDGYASQQYDKVRAVGEVG* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1295 467 FunFam Pentatricopeptide repeat-containing protein At2g34400 194 441 - -
Vvi18g1295 467 Pfam E motif 353 414 IPR046848 -
Vvi18g1295 467 Pfam PPR repeat 238 263 IPR002885 -
Vvi18g1295 467 Pfam PPR repeat 137 160 IPR002885 -
Vvi18g1295 467 Gene3D Tetratricopeptide repeat domain 280 412 IPR011990 GO:0005515
Vvi18g1295 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Vvi18g1295 467 Pfam PPR repeat family 77 121 IPR002885 -
Vvi18g1295 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Vvi18g1295 467 FunFam Pentatricopeptide repeat-containing protein 32 125 - -
Vvi18g1295 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vvi18g1295 467 Gene3D Tetratricopeptide repeat domain 135 279 IPR011990 GO:0005515
Vvi18g1295 467 Gene3D Tetratricopeptide repeat domain 7 134 IPR011990 GO:0005515
Vvi18g1295 467 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 121 IPR046960 GO:0003723|GO:0009451
Vvi18g1295 467 NCBIfam pentatricopeptide repeat 238 271 IPR002885 -
Vvi18g1295 467 NCBIfam pentatricopeptide repeat 80 113 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1295 Vvi-Chr18 12985919 12987853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1295 20 452 Glycoside Hydrolase AT3G49170 30.185 1.51e-71 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1295 - - vvi:100242007 699.508