Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1294 ATGGAGTTCAGACACAAAATTTTGGATTTTGATCCATATACCAAAGTGGGTTTGGTGAATATTGAAAGACAAGTAACACTCCAAAATCACCCTTTTGTGTGCAATGAGATGGTGGATCTTGATCTGCATTCCTTGGCCCGCCAACTGGGATCGTGCAACAACTACGGCTCCATCTACCGAGGAAGACTGCTTCACATCCTTTTCCTCAAATCTGGCGTTCTCCATTCTGTTCTTTCAATTGGAAACCGTCTTCTACAGATGTATTCTAGGTGCAACAGCATGAGGGAGGCGCAGCAACTGTTTGAAGAAATGCCGAAAAGAAATTGTTTCTCTTGGAACACTATGATTGAAGGGTATTTGAAATCAGGGAGCAAAGGGAAGTCACTAGAGTTGTTTGATTCAATGCCCCACAAGGATGCTTTTTCATGGAACGTGGTCATTTCGGGTTTTGCAAAAGAGGGTAATTTGGAGGTTGCCCGGCGTTTGTTCAATGAGATGCCTTGGAAGAATGGGATTGCTTGGAATTCGATGATTCATGGTTATGCCTGCAACGGTCGCCCAAAAGAAGCTGTTGGGTTGTTTAAGGATTTGAGTTTGAATCCGCTGGAACGGTTTTGTGGGGATACGTTTGTTCTGGCTACAGTTGTTGGTGCTTGTACCAATTTGGGGGCTCTTGATTGTGGGAAGCAAATACATGCTCGCATTGTTGTTGATGAAGTGGAATTTGACTCAGTCTTGGGGAGTTCCCTTGTTAACTTGTATGGGAAATGTGGGGATATCGACAGTGCAAATCATGTTTTGAATTTGATGAAGGAGCCAGATGCATTCTCTTTATCTGCATTGATATCAGGATATGCAAGTTGTGGTAGAATGAATGATGCAAGAAGAATTTTTTGTTTGAAAAGTAACGCATGTGTGGTGTTGTGGAACTCCATGATTTCTGGATATGTAGCCAATAATGAAGCATTAGAAGCACTAGAGCTCTTTAATAATATGCGAAGAAAAGGAGTTCAGGAAGACTACTCTACTTTTGCCAGTGTTTTGAGTGCATGCAGTACCTTAGGTATTATTGATCAGGGTATACAAGTGCATGCTCATGTTTATAAAGTTGGGTTCACTAATGATATTATCATCGATAGTGCTCTTGTTGACATGTATTCTAAGTGCAGAAGGCCTGATGATGCTTGCAAATTATTTAGTGATCTTCAAGCCTATGACACCATCTTGCTCAATTCTATGATAACCGTGTATTCCAATTGTGGAAGAATTGATGATGCAAGGCAGATCTTTGATACCATGCCAAGTAAAAGCTTGATCTCATGGAATTCAATGATAGTGGGTTTCAGTCAAAATGCTTGTCCAATTGAAGCATTAGACCTTTTCTGTGAGATGAATAAACTGGGCCTGAGGATGGACAAGTTTAGCCTGGCTGGTGTGATCAGTGCCTGTGCTAGCATCTCTTCACTTGAGCTTGGTGAACAGATTTTTGCTAGGGCTACTATCATCGGACTTGAATTTGATCAGATCATTTCCACCTCCCTTGTGGATTTCTATTGTAAGTGTGGCTTAGTTGAACATGGGCGAAAACTGTTTGACAGAATGATGAAATCTGATGAAGTCCCATGGAACTCTATGTTGATGGGTTATGCTACAAATGGCCATGGAATTGAAGCCTTGAATGTATTTGATCAAATGAGAAGTGTGGGTGTACAACCCACTGATATTACATTTGTTGGGGTTCTGTCTGCCTGTGATCATTGTGGGCTGGTTGAAGAGGGTCGAAAATGGTTTTATGCAATGAAACTTGACTATCATATTAACCCAGGGATTGAGCACTACTCTTGCATGGTTGATCTATATGCTCGTGCAGGTTTGCTTGAGGATGCAATGAATCTTATTGAACAAATGCCATTAAAGGCAGACACAAGCATGTGGTCATCAGTATTGAGGGGCTGTGTAGCTCATGGGAATAACATTCTTGGTAAGAAAGTTGCAAAACGAATTATTGACCTTGACCCTGAGAATTCAGGTGCTTATGTGCAGCTGTCTGGCATATATGCCACTTTTGAGGACTGGGGAAGATCAGCACAGGTTAGAAAGTTGATGTATGATAAGAAAATACCAAAGGTACCTGGTTGCAGTTGGGCAGATAGTTTAACTTCGTGA 2166 0.4146 MEFRHKILDFDPYTKVGLVNIERQVTLQNHPFVCNEMVDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCSWADSLTS* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1294 721 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 135 IPR046960 GO:0003723|GO:0009451
Vvi18g1294 721 FunFam Pentatricopeptide repeat-containing protein chloroplastic 590 716 - -
Vvi18g1294 721 Pfam E motif 656 715 IPR046848 -
Vvi18g1294 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Vvi18g1294 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vvi18g1294 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 537 IPR002885 -
Vvi18g1294 721 FunFam Putative pentatricopeptide repeat-containing protein 360 490 - -
Vvi18g1294 721 Pfam PPR repeat family 538 584 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat family 305 351 IPR002885 -
Vvi18g1294 721 Gene3D Tetratricopeptide repeat domain 207 363 IPR011990 GO:0005515
Vvi18g1294 721 Gene3D Tetratricopeptide repeat domain 32 137 IPR011990 GO:0005515
Vvi18g1294 721 Gene3D Tetratricopeptide repeat domain 581 674 IPR011990 GO:0005515
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 439 472 IPR002885 -
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 307 337 IPR002885 -
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 410 436 IPR002885 -
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 512 541 IPR002885 -
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 110 136 IPR002885 -
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 173 197 IPR002885 -
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 141 175 IPR002885 -
Vvi18g1294 721 NCBIfam pentatricopeptide repeat 542 573 IPR002885 -
Vvi18g1294 721 Gene3D Tetratricopeptide repeat domain 439 580 IPR011990 GO:0005515
Vvi18g1294 721 Gene3D Tetratricopeptide repeat domain 364 437 IPR011990 GO:0005515
Vvi18g1294 721 Gene3D Tetratricopeptide repeat domain 138 201 IPR011990 GO:0005515
Vvi18g1294 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 138 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 173 197 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 277 299 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 512 537 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 248 272 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 411 436 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 380 403 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 82 109 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 439 469 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 110 137 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 612 637 IPR002885 -
Vvi18g1294 721 Pfam PPR repeat 141 169 IPR002885 -
Vvi18g1294 721 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 492 588 - -
Vvi18g1294 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Vvi18g1294 721 FunFam Pentatricopeptide repeat-containing protein mitochondrial 32 138 - -
Vvi18g1294 721 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1294 Vvi-Chr18 12980373 12984241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1294 40 717 Glycoside Hydrolase AT3G49170 29.767 3.10e-104 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1294 - - vvi:100264292 1392.48