Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1292 ATGGGTGTGAATGCAGCTTCTGTACTCAATCGACTTCTTCAGCGCAACACCCACAAGCCTAAAGCTCTACCCACCGACTCCAAAGCCTTAACCACAACAACTGTCCTTACTCACCTCAACGCCGGTCGCCTCCGAAAAGCCGTATCCATCCTCTTTGCTTCCCCAGTTCCCTTCCCCTTTTCACTCTATGCTCGCCTTTTCCAGATTTGTTCTTCCAATCTTGCAATCGTTGAGGCCCGTAAAGTGGAATCCCACTTGATTACCTTCTCGCCTGCACCGCCGATCTTTCTTTTGAACCGTGCGATTGAAACCTATGGAAAATGCAGTTGTTTGGATGATGCTAGGGAGCTGTTTGAGGAAATGCCCCAAAGGGATGGTGGTTCGTGGAATGCGATGATCACGGCCTATGCGCAAGGTGGGTGTGCGGAGAAGGCGTTGTGGTTGTTCTCGAGGATGAATAGATTGGGGATTTGGGCTAATGAGATCACGTTTGCTAGTGTTCTTGGATCTTGTGCTACAGTATTGGCACTGTTTCTTTCGAAGCAGATTCATGGGCTTATCGTGAAATATGGTTTTTGCTGGAACGTAATTTTGGGGAGTTCTCTGGTTGATATATATGGGAAATGTCGGGTTATGAGTGATGCACGTAGAATGTTTGATGAAATTGAGAATCCAAATGCCATTTCCTGGAATGTGATTGTCAGGCGGTATCTTGAGATGGGTAATGAAAAGGAAGCAGTTGTTATGTTTTTTAAGATGATCCGAGCAAACATTAGGCCATTGAATTTTACATTCTCCAATGCTCTTATTGCTTGTTCTAGTATATCTGCACTCCAGGAGGGGATTCAGATTCATGGAGTTGCAATTAGGATTGGTTATGACGAGGATGAGGTGGTTTCTAGCTCTCTTATTGATATGTATGCAAAATGTGGGGATTTGGAGAGCGCTTGTAGGATTTTTGAACTGCCCAGTTCAAAAAATTTGATCTCCTGGACTTCAATTGTGTCGGGGTATGCAATGAGTGGGCAAACAAGAGAGGCAAGAGTGCTCTTCGATGAGATGCCAGAAAGGAGTGTAATCTCATGGAATGCAATGTTAGCAGGGTATACACATTTCTGCCAATGGGAAGAGGCTTTGGAATTTGTTTTTCTGATGCGCAAAGCAACTCAAGACATTGACCATGTCACTGTTGGGTTAATCCTAAATGTGTGTGCTGGTCTTTCAGATGTTGAATCGGGAAAACAGGTTCATGGGTTTATCTATAGGCATGGTCTCTATTCCAATCTCTTTGTTGGCAATGCACTTCTTCACATGTATGGGAAATGTGGGAACTTGAGAAGCACAAGACTTTGGTTCTACCAGATGAGTCATTGGCGAGATAGGATTTCTTGGAATGCTCTATTGACTAGCCATGCTCGCCATGGCTTGAGTGAAGAAGCTATGACAATTTTTGGGGAGATGCAATGGGAGACAACGCCATCTAAATTTACGCTTGGTACACTTTTGTCAGCTTGTGCAAATATTTTTGCGCTTGAGCAAGGTAAACAAATCCATGGGTTTATGATTAGAAATGGTTATGAGATAGATGTTGTTGCCAGAGGAGCTTTGGTAGACATGTATTCCAAATGTCGATGTCTTGAATATGCCCTCAAGGTTTTTAAAGAGGCTCCTTCACGGGATTTGATTCTTTGGAACTCCATGATTTTGGGATGTTGTCACAATGGAAGGGGTAGAGATGTACTTGGACTGTTTGGATTGATGGAGGAAGAAGGGGTTAAGCCTGACCACATCACCTTTCAGGGTATTTTGCTTGGTTGTATTTGTGAGGGTCTTGCTGGGTTAGGTACTGAGTATTTTAATTCAATGAGCAACAAGTACTGTATCATACCTCGATTGGAGCATTATGAGTCCATGATTGAACTGTATGGTAGGCATGGGTTCATGGATGAGCTTGAGGATTTCATTAAGAGGATGCCATTTGAGCCCACTGTTGCAATGTTGACAAGAGTCTTCAATGCTTGCAGTGAACATGGTCACTCAAGGTTGGGAAAATGGGCTGCTGAACAACTAAATGAATTGAATCCTTCAACTCCATTTCATTTTCAAATTTTGGACAGAAGCAGAGTGGGCAAGTAG 2136 0.4345 MGVNAASVLNRLLQRNTHKPKALPTDSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVAMLTRVFNACSEHGHSRLGKWAAEQLNELNPSTPFHFQILDRSRVGK* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1292 711 FunFam Pentatricopeptide repeat-containing protein 52 171 - -
Vvi18g1292 711 Pfam PPR repeat family 560 606 IPR002885 -
Vvi18g1292 711 Gene3D Tetratricopeptide repeat domain 176 279 IPR011990 GO:0005515
Vvi18g1292 711 Gene3D Tetratricopeptide repeat domain 510 609 IPR011990 GO:0005515
Vvi18g1292 711 Gene3D Tetratricopeptide repeat domain 58 175 IPR011990 GO:0005515
Vvi18g1292 711 Gene3D Tetratricopeptide repeat domain 280 411 IPR011990 GO:0005515
Vvi18g1292 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vvi18g1292 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Vvi18g1292 711 FunFam Pentatricopeptide repeat-containing protein 411 514 - -
Vvi18g1292 711 FunFam Pentatricopeptide repeat-containing protein At3g26540 281 410 - -
Vvi18g1292 711 FunFam Pentatricopeptide repeat-containing protein At3g26540 176 277 - -
Vvi18g1292 711 Pfam PPR repeat 102 124 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 360 387 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 329 358 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 228 258 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 301 321 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 635 658 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 128 157 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 462 488 IPR002885 -
Vvi18g1292 711 Pfam PPR repeat 535 558 IPR002885 -
Vvi18g1292 711 FunFam pentatricopeptide repeat-containing protein At2g33680 533 706 - -
Vvi18g1292 711 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 342 699 IPR046960 GO:0003723|GO:0009451
Vvi18g1292 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Vvi18g1292 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vvi18g1292 711 Gene3D Tetratricopeptide repeat domain 610 704 IPR011990 GO:0005515
Vvi18g1292 711 Gene3D Tetratricopeptide repeat domain 412 509 IPR011990 GO:0005515
Vvi18g1292 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi18g1292 711 NCBIfam pentatricopeptide repeat 329 358 IPR002885 -
Vvi18g1292 711 NCBIfam pentatricopeptide repeat 360 387 IPR002885 -
Vvi18g1292 711 NCBIfam pentatricopeptide repeat 228 260 IPR002885 -
Vvi18g1292 711 NCBIfam pentatricopeptide repeat 462 488 IPR002885 -
Vvi18g1292 711 NCBIfam pentatricopeptide repeat 563 595 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1292 Vvi-Chr18 12969697 12971832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1292 20 698 Glycoside Hydrolase AT3G49170 31.089 2.12e-102 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1292 - - vvi:100253985 1448.34