Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1288 ATGGCGACGACGACTGATTCTTCGCCCCGTGGTTCGGGATTTTCCGCTGACGGTGTCCATAGCCCGCTGCGCAGGAGGAATTTATCTTCTCCTTGGGCTCAGATAGTGCGGGGAGAGACGGAATCGATGTCGTCTGTTCCTCATTCACCGACATCATCGTCTCCGGTGACTTCTTGCCCGGAACAAATCTCTTTTTCTGAATGCTCCCCGACCAAGCCTTTGTCACCGTCGCCGTCACGGTCACCGGCACCGGATAATTCTGGGGTTGGGGAGGCTTTGCTGGAGAATAGCGATGGTTGTGGAAGCAATGCGGGTCGTCAAAAGAAGCCGGCTTGGAACAAACCCTCGAACGACGTCGTTGAGGTTGGTCCCGTAATGGGCGCGGTGTCTTGGCCTGCACTTTCTGAGTCTACTAGGGCTTCACCAAGGTCTTCGTCTGATTCTCCGAAGCCTGCTGTGGATGGATCGGCCGCCAGTATTCAGGGACCTGTAATTCCACATTCGCCTCAGAAACAAGTTCCTGCTAATACAAACCCTAATTCTTCACAAAACCATGCATCCCCATTTCGGCAAAGATCGATTAAGAGCGGTGGTGGGTCTTCACAGACTGTCCATGGTCACCTGCCTTCACAGCCGCCTCCACCACCGCCACCTTATCCTCTATTTGAAATGCCTCAAAATAAGTATGCAAAAATGGCGCCTCAAGTGCTGGATTCTTCTACAAGAGAGCCTCCTTACAGGAACAATACTTGGGAAACCAGACCAATTGGAGGATTTGTGCCACAACCACGTGGACTAAGTGATCATCCTTTGCCAAGAAATTCTCGCCGAGGAAACTTTGGACCCCATCCCCGAGGAGATGGCCCACACCACAACAACTATGGGGGTCGACGTGATCAAGATCGTGGGAATTATGAATGGAATTCTCGAAGTTCTAATGTTAGAGATATTCACATGCAGCCTCAAAGAGCTCCTCCTAGAGGCTTTATAAGAGCTGCACCACAATCCAGTTCTCCCCGATTCATGACACCACAGCCTATCCGACCCTTCATGAATCCTGCCGGTTATCCGGATATGCCATCTCAAATGTATTATTTCCCAGCACTGCCTTCAGAGCCCTTCAGGAGTGTGCCATTTGTTGCACATGCGCCACCTCCTCCAATGTTTATCCCTGTTCCGGACCCTCCTCTCCCTACTTTGTTAGTTAATCAGATAGAATATTATTTCAGTGATGTTAATTTGATAAAAGACGATTATTTAAGGTCATATATGGATGATCAGGGCTGGGTTCCCATTACTTTGATAGCAGGCTTTCCTCGAGTACAGAGTTTAACAAATAGTATACCATTGATATTGGATTCCTTGAGAACTTCAACTTCTGTGGAAGTGCAGGGTGACAAAGTGAGGAGGCGTAATGAATGGATGAAATGGTTACCTAGTTCTGCCAGGTTTCATGCTGACCTGGGCTTACAATCCCCTGGTGGATTGAGCTATGGTACATTGGTATCTTCTTTTCAAAAGGTCACAGTGGAGGAAGGGAGTGCTAACCAAAACAGTTTGAAGGGTAAAACAGAAGCTCACACTGAGACTGTTTTGGGTAGGGCTTCATCGGAGGAGTTTACTGGTGAATCACTGTGCAATGGAAGGGTACAGACTAAGACGCCACCTCAAGCTGGAGCTGATCAATCTGCTATTTAG 1698 0.4865 MATTTDSSPRGSGFSADGVHSPLRRRNLSSPWAQIVRGETESMSSVPHSPTSSSPVTSCPEQISFSECSPTKPLSPSPSRSPAPDNSGVGEALLENSDGCGSNAGRQKKPAWNKPSNDVVEVGPVMGAVSWPALSESTRASPRSSSDSPKPAVDGSAASIQGPVIPHSPQKQVPANTNPNSSQNHASPFRQRSIKSGGGSSQTVHGHLPSQPPPPPPPYPLFEMPQNKYAKMAPQVLDSSTREPPYRNNTWETRPIGGFVPQPRGLSDHPLPRNSRRGNFGPHPRGDGPHHNNYGGRRDQDRGNYEWNSRSSNVRDIHMQPQRAPPRGFIRAAPQSSSPRFMTPQPIRPFMNPAGYPDMPSQMYYFPALPSEPFRSVPFVAHAPPPPMFIPVPDPPLPTLLVNQIEYYFSDVNLIKDDYLRSYMDDQGWVPITLIAGFPRVQSLTNSIPLILDSLRTSTSVEVQGDKVRRRNEWMKWLPSSARFHADLGLQSPGGLSYGTLVSSFQKVTVEEGSANQNSLKGKTEAHTETVLGRASSEEFTGESLCNGRVQTKTPPQAGADQSAI* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1288 565 MobiDBLite consensus disorder prediction 208 223 - -
Vvi18g1288 565 MobiDBLite consensus disorder prediction 163 207 - -
Vvi18g1288 565 MobiDBLite consensus disorder prediction 33 74 - -
Vvi18g1288 565 ProSiteProfiles La-type HTH domain profile. 391 480 IPR006630 -
Vvi18g1288 565 MobiDBLite consensus disorder prediction 513 565 - -
Vvi18g1288 565 MobiDBLite consensus disorder prediction 290 305 - -
Vvi18g1288 565 CDD LAM 401 470 - -
Vvi18g1288 565 MobiDBLite consensus disorder prediction 1 119 - -
Vvi18g1288 565 SMART la 395 471 IPR006630 -
Vvi18g1288 565 MobiDBLite consensus disorder prediction 134 152 - -
Vvi18g1288 565 SUPERFAMILY "Winged helix" DNA-binding domain 387 479 IPR036390 -
Vvi18g1288 565 MobiDBLite consensus disorder prediction 133 325 - -
Vvi18g1288 565 Gene3D - 392 481 IPR036388 -
Vvi18g1288 565 PANTHER LUPUS LA PROTEIN-RELATED 128 483 IPR045180 -
Vvi18g1288 565 Pfam La domain 401 456 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1288 Vvi-Chr18 12941764 12948073 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1288 K18757 - vvi:100243746 1075.85