Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1284 ATGTCGTCGTCGAGGAAGATCACTCTGAAGAGCTCCGACGGCGAGGCTTTCGACGTCGATGAAGCCGTAGCATTGGAATCGCAGACGATCAAGCACATGATCGAGGACGACTGCGCGGACAACGGCATTCCGTTGCCGAACGTCACCAGCAAGATCTTGTCGAAGGTGATCGAATACTGCAAAAAGCACGTGGAAGCGCCGAAGCCCGAGGAGCGTAGTGGCGTCGATGAGGAACTCAAGGCTTGGGATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGGGCTTTCTCTTGGAGAAAAGCTACCACCGTAGCTCCTTATGTCGGGCTGGATTCCCAAGCCAAGAAAGGGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTTTCAATATCAAAAATGATTTTACACCGGAGGAAGAGGAGGAGGTGCGGCGGGAGAACCAGTGGGCCTTTGAGTGA 540 0.5111 MSSSRKITLKSSDGEAFDVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEAPKPEERSGVDEELKAWDADFVKVDQATLFDLILGFLLEKSYHRSSLCRAGFPSQERAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1284 179 FunFam Protein CBG09126 4 101 - -
Vvi18g1284 179 PANTHER SKP1 2 176 IPR016897 GO:0006511
Vvi18g1284 179 SUPERFAMILY POZ domain 5 67 IPR011333 -
Vvi18g1284 179 PIRSF SCF_Skp 122 179 IPR016897 GO:0006511
Vvi18g1284 179 PIRSF SCF_Skp 1 101 IPR016897 GO:0006511
Vvi18g1284 179 SMART skp1_3 4 129 IPR001232 GO:0006511
Vvi18g1284 179 Pfam Skp1 family, dimerisation domain 130 177 IPR016072 GO:0006511
Vvi18g1284 179 Gene3D Potassium Channel Kv1.1; Chain A 1 179 IPR011333 -
Vvi18g1284 179 SUPERFAMILY Skp1 dimerisation domain-like 122 177 IPR036296 GO:0006511
Vvi18g1284 179 Pfam Skp1 family, tetramerisation domain 6 64 IPR016073 GO:0006511
Vvi18g1284 179 CDD BTB_POZ_SKP1 6 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1284 Vvi-Chr18 12901041 12904645 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1284 K03094 - vvi:100252349 295.819