Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1277 ATGCAACAGGGAGATTACAATTCTGTTTCCTATTATCAATATCAACACCCTCAAAACCCTAACCCCAACCCTATCCCCAATCCTAATTCGATTCCGATCGATCCCCAGCCAAATCCTTCGCCTTCGACCTACGCTTCTGCGCCTCCGTTTACCACTAGTTATTCTCCCTCCGATTACTCTGTTTATACCCCCGCGTATCCTCCATATCCGCAAAATCCCGAGCCTGTCCCCAATATCCCTCCCACGGCTCCTTCATATTCTCCGAGCCCTAATTTGCAGTCATTCAATCCATCGCCTCAGCCGTCGTCTTTTCCTCCTTTCGAAGCTCAGGGTTCGTATCAACCTCCGGCGCAGCAGCCTCCGTATCATCCACAGTACGATCAACATCTGACGGCTCCCAATTTCTCCAACCCTATTCCCAATTCCAATGCTAATCCGTCGTACGCAAATCCTCCTGCCTACTCGGCTTCGTACAGCCACGTAGGCTCTTCCGTGCCGCCCGTTTACGAGAACCCGTATGAGACTACTCCAAAATTTGATCAAACTGGCGGATATTTTGATGAAACTTCGGGTAGATATGGAGGCTATAGCCGGACACGGTCCGATTTAGGATCCGAAATGTATTCGAAGAGATCGGATAGTGGGGTGTCGTCGAGGTACGATCTAGGTTCAATTCGAGATGATGGGTATGGTGATGGAGTGTATGCTTACGAAGGGAGCAAGGTGGAGCCCTATGGTGCAAGAGGCACAGCTCCAAAGTCGTCGACTTGGGTGGGTTTTGATGATTACGGGAGGTCAATCAGTTTTCCTTCTGGTAAAGACCAGCCATCTGCCAAGATCGTGAGAGCAGTGCCCAAGGCGGAGACCCAGCAAGATGTAAAGAGCGGGGTGCAGAAGTTTCGGGTCAAGCTATTGTCTGAAGGTGGAGGACAGAGCTCCATGGATGTTCTTTGTCAGATTGGTTTGGATGGAATTCGTATGCTTGAACCCAGCACTAGTCGAACATTGAGAATATATCCACTTGAGACAATAACAAGATGTGAAGTCACTGACTCATCCACTTTTGCATTTTGGTCCAAAAGTTCTGTGGATATTGAACCAAGACGGATCAGGCTGCAATCAAATAGCTATACCACTAATACTATTTTGGACACAGTGACAGCTGCAACCGTGCAGATTAAGGAGATGGGTGGTAGAAGCAGGCCTTCCGAATCTTTAAAGACAACTGAGCAACCTACCGAGAAGAAGAAAGGTTTTGCTGACTGGATGAACATAATAAAGCCTGGAAATGAGGAGAAAGATCATTGGGTCCCTGATGAAGCAGTTACCAAGTGTACAGCCTGTGGGACAGATTTTGGGGCTTTTGTGCGTAGGCATCACTGCCGGAATTGCGGAGATATTTTCTGTGACAAGTGTACTCATGGTAGAATAGCTTTAACAGCTGATGAGAGCGCTCAGCCAGTTCGAGTTTGTGATCGATGCATGGCTGAAGTGACACAGAGGTTGAGTAATGCTAAGGAAGCAGCCAACAAACCTGCATTGCAAAGTCATGAGGATCTTGCACGGAAACTTCAGGAGGAGATGGAGAGAAATCGCAAGGCATCATCAGGCTCCAAGTCTGATGGATCTGGGAAGCGGATGAAAGAAGTTGCCTGTCCCATTTGCACTGTCCATTTGCAGGTCCAAGTTCCCAGCTCAGGATCTGAGACCATTGAGTGTGGGGTTTGCCAGCATCCTTTCCTTGTGAGTGCTCATTGA 1758 0.4829 MQQGDYNSVSYYQYQHPQNPNPNPIPNPNSIPIDPQPNPSPSTYASAPPFTTSYSPSDYSVYTPAYPPYPQNPEPVPNIPPTAPSYSPSPNLQSFNPSPQPSSFPPFEAQGSYQPPAQQPPYHPQYDQHLTAPNFSNPIPNSNANPSYANPPAYSASYSHVGSSVPPVYENPYETTPKFDQTGGYFDETSGRYGGYSRTRSDLGSEMYSKRSDSGVSSRYDLGSIRDDGYGDGVYAYEGSKVEPYGARGTAPKSSTWVGFDDYGRSISFPSGKDQPSAKIVRAVPKAETQQDVKSGVQKFRVKLLSEGGGQSSMDVLCQIGLDGIRMLEPSTSRTLRIYPLETITRCEVTDSSTFAFWSKSSVDIEPRRIRLQSNSYTTNTILDTVTAATVQIKEMGGRSRPSESLKTTEQPTEKKKGFADWMNIIKPGNEEKDHWVPDEAVTKCTACGTDFGAFVRRHHCRNCGDIFCDKCTHGRIALTADESAQPVRVCDRCMAEVTQRLSNAKEAANKPALQSHEDLARKLQEEMERNRKASSGSKSDGSGKRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1277 585 MobiDBLite consensus disorder prediction 19 44 - -
Vvi18g1277 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 504 IPR013083 -
Vvi18g1277 585 MobiDBLite consensus disorder prediction 1 150 - -
Vvi18g1277 585 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 439 499 IPR017455 -
Vvi18g1277 585 Coils Coil 514 534 - -
Vvi18g1277 585 SMART fyve_4 431 500 IPR000306 GO:0046872
Vvi18g1277 585 MobiDBLite consensus disorder prediction 66 87 - -
Vvi18g1277 585 CDD FYVE_EEA1 436 498 - -
Vvi18g1277 585 MobiDBLite consensus disorder prediction 129 150 - -
Vvi18g1277 585 PRINTS Proline rich extensin signature 30 51 - -
Vvi18g1277 585 PRINTS Proline rich extensin signature 17 29 - -
Vvi18g1277 585 PRINTS Proline rich extensin signature 80 97 - -
Vvi18g1277 585 PRINTS Proline rich extensin signature 60 76 - -
Vvi18g1277 585 PRINTS Proline rich extensin signature 99 124 - -
Vvi18g1277 585 MobiDBLite consensus disorder prediction 45 60 - -
Vvi18g1277 585 SUPERFAMILY FYVE/PHD zinc finger 434 505 IPR011011 -
Vvi18g1277 585 MobiDBLite consensus disorder prediction 526 545 - -
Vvi18g1277 585 FunFam Zinc finger, FYVE-type, endofin 426 504 - -
Vvi18g1277 585 Pfam FYVE zinc finger 435 499 IPR000306 GO:0046872
Vvi18g1277 585 PANTHER PROTEIN FREE1 1 585 IPR045893 GO:0036258|GO:0043130
Vvi18g1277 585 MobiDBLite consensus disorder prediction 395 415 - -
Vvi18g1277 585 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1277 Vvi-Chr18 12787292 12809711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1277 417 513 EF-hand Containing Proteins AT3G14270 31.034 7.23e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1277 - - vvi:100259195 1035.02