Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1276 ATGGCTGTTGATGCACAGTATTATTCTGAAAGTATGGGTTTGGCCATGTGTGGCGTACAGGATTGGTGGGTGAACCCCGTTTCTTCTTCTGGGCTTGACGTTGATGCTTCCAATTTCAATCCGCAGCAACTGCCTCAGGTTCATCATCTTCATAACCACTACAGCATTCAGGATCTCTGTGTTGACGATAACACGAGTCCAAATCCCTTCCCCTCTTCTTCAAGCAGTGATAAGCTTCTCCCAATGGCGTTCTCTCAATCTTTGGCCGATCAGCTTGAGACCCAGAGACTCGAAATCGATTGGCTTCTTCATTTTCAGCTTGAGAGATTGAAATTTGCTTTACAAGAACAACGAAAGCAACAACTGGGGTCGCTGTTGAACAGATTGGAATCAAAGACTATAACCCTAATGAGACAAAAGGAGGAAGACTTGGCAAGAGCGACGAAGAAGATGATGGAGCTGGAAGATTGGTTGAGAAGGAGAGAAGTGGAAAGCCAAGGATGGCAGCGAGTGGCGACAGAGAACGAAGCGATGGTCAAATATCTAAACAACATGCTGGAACAGGTCAGAGAAACGCACTTATTGCTGAGCAACGGAGCCGAAGATGCAGAGTCGTATGGGGGTGGTCCCATTGACAGAAGAGAGGACGAAGGCAGGGGAAGAGACAGAGGAGAAGGAGGAGAAGAAGTGAAAGACCAGTGCAAAAAGATGGCATGCAAACGCTGTAATTCTCGGACCTCGTGCTTTCTTTTCTTCCCTTGCAGACACCTTTGTTCGTGCAAGTCTTGTGAGCCCCTTCTTGGTTGCTGCCCAGTCTGTAAATCTGTAAAGGAGGCAAGCATGGAGGTTTTCTTGGTCTAA 861 0.4727 MAVDAQYYSESMGLAMCGVQDWWVNPVSSSGLDVDASNFNPQQLPQVHHLHNHYSIQDLCVDDNTSPNPFPSSSSSDKLLPMAFSQSLADQLETQRLEIDWLLHFQLERLKFALQEQRKQQLGSLLNRLESKTITLMRQKEEDLARATKKMMELEDWLRRREVESQGWQRVATENEAMVKYLNNMLEQVRETHLLLSNGAEDAESYGGGPIDRREDEGRGRDRGEGGEEVKDQCKKMACKRCNSRTSCFLFFPCRHLCSCKSCEPLLGCCPVCKSVKEASMEVFLV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1276 286 Coils Coil 137 157 - -
Vvi18g1276 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 286 IPR013083 -
Vvi18g1276 286 MobiDBLite consensus disorder prediction 200 227 - -
Vvi18g1276 286 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 221 285 - -
Vvi18g1276 286 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 63 283 IPR017066 -
Vvi18g1276 286 MobiDBLite consensus disorder prediction 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1276 Vvi-Chr18 12783608 12784580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1276 K19042 - vvi:100252373 524.628