LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1270	ATGATATCGAACATAGCAGAGGACGAGGATAAATGGCTTGCCGAAGGGATCGCTGGGATTCAACACAACGCCTTTTATATGCATCGTTCTGTGGACTCCAACAATCTCAGAGAAGTCCTCAAGTACTCCGCTCAGATGCTGTCGGAGCTTCGGACTTCTAGACTCTCTCCTCACAAATACTACGAACTCTATATGCGAGCTTTTGATGAATTGAGGAAGCTGGAGATATTCTTTAAGGACGAAAGCAGGCATGGTTGTTCTATCATTGATCTGTATGAGCTAGTTCAGCATGCCGGAAACATATTGCCTAGACTGTATCTCTTATGTACGGTAGGATCTGTATATATCAAATCAAAGGAGGCTCCTCCTAAGGATGTCCTTAAAGATCTTGTGGAAATGTGCCGTGGTATTCAACATCCTATACGTGGACTTTTCTTAAGAAGTTACCTTTCTCAAGTCAGTAGAGATAAATTACCTGACATTGGCTCTGACTATGAAGGAGATGCTGACACTGTCATGGATGCTGTAGAATTTGTACTACAGAACTTCACAGAGATGAATAAACTTTGGGTTCGCATGCAGCATCAGGGACCTGGCCGGGCAAAAGAGAAACAGGAAAAGGAAAGAAGTGAACTTCGGGATCTTGTTGGGAAGAATCTACATGTTCTCAGTCAGATTGAGGGTATTGACCTTGAAATGTATAAAGATACTGTTCTTCCCAGGGTCTTAGAGCAGGTGGTCAACTGTAAAGATGAGCTTGCACAATATTATTTGATGGATTGCATAATTCAGGTATTTCCTGATGAGTACCACTTGCAGACACTTGAGACGTTGTTAGGTGCTTGCCCCCAACTTCAGCCTACTGTTGACATCAAGACAGTGTTGTCTCAACTAATGGAGAGATTATCAAACTATGCAGCTTCAAGTGCAGAAGTATTACCTGACTTCCTGCAAGTAGAAGCTTTTGCTAAATTGAGCAGTGCCATTGGGAAGGTGATAGAAGCACAGGTTGACATGCCTGTTTTTGGAGCAATAACTTTATATGTCTCTCTTCTTACATTTACTCTTCGTGTTCATCCTGATCGGCTTGATTATGTGGATCAAGTACTGGGAGCATGTGTTAAGAAACTCTCTGGCAAGCCAAAGCTTGAAGATAGTAAGGCAACAAAACAAATTGTTGCACTTTTGAGCGCCCCATTGGAGAAGTACAATGATATTGTCACAGCCCTGACACTTTCTAATTATCCCCGTGTTATGGACCATCTCGATAATGGAACAAATAAAATCATGGCAATGGTTATTATTCAAAGCATTATGAAAAACAGTACTTGTATTTCTACTGCTGACAAGGTTGAAGCCTTATTTGAATTAATAAAAGGACTGATTAAGGATTTGGATGGATTTCCTGTGGACGAGCTTGATGAGGAGGATTTCAAGGATGAACAAAATTCTGTCGCTCGTCTCATACACATGTTCTACAATGATGACCCCGAAGAAATGTTGAAGATTATATGCACTGTGAAGAAGCATATTATGACTGGAGGGTTGAGGCGCCTACCTTTTACTGTTCCTCCTCTTATTTTTTCTGCTCTCAGATTGGTCAGGCGATTGCAAGGTCAGGAAGGTGATGTTGTTGGTGAAGAAGAGCCTGCAACTCCCAAAAAAATATTTCAACTTTTAAATCAGACTATTGAGGCTCTTTCATCTGTTCCTTCACCTGAACTGGCATTAAGGTTGTACCTGCAATGTGCTGAGGCTGCTAATGACTGTGATCTTGAGCCTGTTGCTTATGAATTTTTCACTCAGGCATTCATATTGTATGAAGAAGAAATTGCGGATTCCAAAGCTCAAGTGACTGCAATTCATCTAATAATTGGGACTCTGCAGAGGATGAATGTTTTTGGTGTTGAGAATAGGGATACATTAACGCACAAAGCCACCGGGTATTCAGCAAAGCTTTTAAAGAAACCTGATCAATGCAGAGCAGTTTATGCATGTTCCCATCTTTTTTGGGTTGACGATCAAGATGGCATTAAGGATGGAGAAAGGGTCATGCTTTGCCTAAAGCGTGCATTAAGGATTGCCAATGCTGCTCAACAAATGGCCACCGTTGCACGGGGTAGCAGTGGACCGGTCATACTCTTTGTGGAGATACTGAACAAGTACATTTATTTTTTTGAGAAGGGGAACTCACAGGTCACAAGTTCAGCAATCCAGGGTTTGATAGAATTAATTACAAGTGAGATGCAAAGCGAGTCCACTACCCCAGATCCACCTTCAGATGCTTTCTTTGCCAGCACAATGCGGTACATTCAGTTCCAGAAACAGAAAGGTGGTGCGATGGGTGAGAAATATGATTCTATCAAAGCGTGA	2373	0.418	MISNIAEDEDKWLAEGIAGIQHNAFYMHRSVDSNNLREVLKYSAQMLSELRTSRLSPHKYYELYMRAFDELRKLEIFFKDESRHGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPPKDVLKDLVEMCRGIQHPIRGLFLRSYLSQVSRDKLPDIGSDYEGDADTVMDAVEFVLQNFTEMNKLWVRMQHQGPGRAKEKQEKERSELRDLVGKNLHVLSQIEGIDLEMYKDTVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLMERLSNYAASSAEVLPDFLQVEAFAKLSSAIGKVIEAQVDMPVFGAITLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSGKPKLEDSKATKQIVALLSAPLEKYNDIVTALTLSNYPRVMDHLDNGTNKIMAMVIIQSIMKNSTCISTADKVEALFELIKGLIKDLDGFPVDELDEEDFKDEQNSVARLIHMFYNDDPEEMLKIICTVKKHIMTGGLRRLPFTVPPLIFSALRLVRRLQGQEGDVVGEEEPATPKKIFQLLNQTIEALSSVPSPELALRLYLQCAEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVMLCLKRALRIANAAQQMATVARGSSGPVILFVEILNKYIYFFEKGNSQVTSSAIQGLIELITSEMQSESTTPDPPSDAFFASTMRYIQFQKQKGGAMGEKYDSIKA*	791

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1270	790	Pfam	Vacuolar protein sorting-associated protein 35	12	747	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Vvi18g1270	790	FunFam	Vacuolar protein sorting-associated protein 35	466	775	-	-
	Vvi18g1270	790	PANTHER	VACUOLAR SORTING PROTEIN 35	6	789	IPR005378	GO:0015031\|GO:0030906\|GO:0042147
	Vvi18g1270	790	Gene3D	-	466	775	IPR042491	-
	Vvi18g1270	790	PIRSF	Retromer_Vps35	2	790	IPR005378	GO:0015031\|GO:0030906\|GO:0042147

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1270	Vvi-Chr18	12725431	12752925	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1270	K18468		-	vvi:100243826	1551.18