Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1269 ATGAGCGCCTCTAGGTTTATAAAGTGCGTTACGGTCGGTGATGGTGCTGTCGGCAAAACCTGCATGCTGATTTCCTACACCAGCAACACTTTCCCTACGGATTATGTGCCAACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTTGATGGGAGCACTGTCAATTTAGGGTTGTGGGATACTGCTGGCCAGGAGGATTACAATAGATTAAGACCCTTGAGCTATCGAGGGGCTGACGTTTTTATTCTTGCATTCTCTCTCATTAGCAAGGCCAGCTATGAAAATGTTGCCAAAAAGTGGATTCCTGAACTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTTGGAACCAAGCTTGATCTTCGGGATGATAAGCAATTCTTTGTAGACCACCCTGGTGCAGTGCCTATTACTACAGCTCAGGGAGAAGAACTGAAGAAAGTGATTGGTGCGCCTGCCTATATTGAATGTAGCTCAAAAACACAGCAGAACGTGAAGGCTGTTTTTGATGCAGCTATCAAGGTGGTGCTCCAGCCACCTAAGCAGAAGAAGAAGAAGAAGAAGGCACAAAAGACCTGCTCTATATTGTGA 594 0.4495 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELKKVIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKKKAQKTCSIL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1269 197 Gene3D - 5 192 IPR027417 -
Vvi18g1269 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Vvi18g1269 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Vvi18g1269 197 PANTHER RHO FAMILY GTPASE 4 195 IPR003578 GO:0005525|GO:0007264
Vvi18g1269 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Vvi18g1269 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Vvi18g1269 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Vvi18g1269 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Vvi18g1269 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Vvi18g1269 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Vvi18g1269 197 FunFam rac-like GTP-binding protein RAC2 5 194 - -
Vvi18g1269 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Vvi18g1269 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Vvi18g1269 197 SMART ras_sub_4 4 180 - -
Vvi18g1269 197 NCBIfam small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Vvi18g1269 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Vvi18g1269 197 CDD Rop_like 6 178 - -
Vvi18g1269 197 SMART rab_sub_5 7 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1269 Vvi-Chr18 12719198 12723931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1269 7 180 EF-hand Containing Proteins AT5G27540 27.586 1.55e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1269 K04392 - vvi:100266143 370.548