Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1267 ATGCTATGTATGAGTTCAACTAAGTACGCTGAATGCCCTTTGTGCAAGTCCAGGCGAAAAGTGAAAGATATTTCTGGAAGAGAAATACGTTACACTGTTTCTGCAGAGGATATTAGAAGAGAGCTGAATATTGAGCCATTTGTAAAACTAGATGGAATTATTACTGAAGAGTCAGAAGCCCAAAATGCAAAAACGAAGGGAAGATGTGATCGATGTGAAGAAGACACTTGGCTCTATTATTACACCAGACAATTGAGATCTGCGGATGAAGGACAGACCATTTTTTATGAGTGCACTAAATGTGGACACAAGTGGTCACAGAATACATGA 330 0.3909 MLCMSSTKYAECPLCKSRRKVKDISGREIRYTVSAEDIRRELNIEPFVKLDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQLRSADEGQTIFYECTKCGHKWSQNT* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1267 109 SMART Cys4_2 67 107 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi18g1267 109 Pfam Transcription factor S-II (TFIIS) 68 105 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi18g1267 109 CDD Zn-ribbon_RPA12 61 108 IPR034004 GO:0006379
Vvi18g1267 109 Gene3D - 27 107 - -
Vvi18g1267 109 FunFam DNA-directed RNA polymerase subunit 34 107 - -
Vvi18g1267 109 PIRSF RNApol_RpoM 1 109 IPR012164 GO:0003899|GO:0006351
Vvi18g1267 109 ProSiteProfiles Zinc finger TFIIS-type profile. 65 106 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi18g1267 109 SUPERFAMILY Zinc beta-ribbon 59 108 - -
Vvi18g1267 109 PANTHER DNA-DIRECTED RNA POLYMERASE 7 107 IPR012164 GO:0003899|GO:0006351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1267 K03000 - vvi:100853901 232.261