Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1253 ATGAGGAAGTGGACGATCCCTTCCGCTCTGCTTTTGCTATGCCTTCTCTGCCTTCTTCCAGATCAAGGGCGGAAGATACACGCCAATGCAGAAGCTGATTCTGAAGAGTTGGTGAATCCACCAAAGGTTGAAGAGAAAATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTTGAGTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGTGAAGGTGATACTGCAAAGCTTGATATCCAGATTAAATTAGACAAGGAAAAGAAAATCCTGTCAATTCGTGATAGAGGTATAGGTATGACAAAGGATGATTTAATCAAGAACTTAGGAACAATCGCAAAATCTGGAACGTCAGCTTTTGTGGAGAAAATGCAAACCAGTGGGGATCTTAATCTCATTGGACAATTTGGAGTTGGGTTCTACTCTGTATATCTTGTTGCAGACTATGTTGAAGTCATTAGCAAACACAATGATGACAAACAGTATGTATGGGAGTCTAAAGCTGATGGAGCTTTTGCAATTTCTGAGGATGTATGGAATGAACCACTCGGACGTGGAACTGAGATCAGATTGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGGAGTTAGTGAAAAGATATTCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATCTGACAGCAGCTCTTCTGAGGAAGAAGTGGAAGATGAAGATGCTGAGAAAAAACCCAAATCAAAAACAGTGAAGGAAACCACTTATGAGTGGGAGCTTTTGAATGATGTGAAGGCTATATGGTTACGGAATCCAAAGGAGGTGACGGAGGAAGAGTACACAAAATTCTACCAGTCTCTAGCTAAGGATTTTAGTGAAGAGAAGCCTCTATCATGGAGTCACTTCACCGCTGAAGGTGATGTGGAGTTCAAGGCTGTTTTGTTTGTGCCTCCTAAGGCTCCTCAGGATCTATATGAGAGTTACTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGGGTCTTGTAGATTCCGACACGTTACCTCTTAATGTTTCACGAGAAATGCTTCAACAACACAGCAGTTTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGATGTTGAAAAGTCCAGTGATGATGATGAGAAGAAAGGTCAGTATGCAAAGTTCTGGAATGAGTTTGGCAAGTCCATAAAACTTGGTATTATTGAAGATGCATCCAACAGAAACCGCTTGGCCAAGCTTCTCAGATTTGAAAGCACAAAGTCAGGTGGCAAATTGGCTTCACTTGATCAATATATCTCAAGAATGAAACCAGGACAGAAGGATATCTTCTACATCACGGGTAACAGCAAGGAGCAATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGGACTATGAAGACAAAAAATTCCAGAATGTGTCAAAGGAAGGCCTGAAACTTGGGAAGGACTCAAAAGATAAGGATCTTAAAGAGTCATTCAAAGATCTGACTAAATGGTGGAAGAGTGCTCTTGCCAGTGAGAATGTTGATGATGTGAAAATAAGCAACCGTCTGGCTGACACTCCTTGTGTGGTTGTTACATCAAAATATGGATGGAGTGCAAACATGGAGAGAATCATGCAATCACAGACTCTTTCAGATGCCAGCAAGCAAGCATATATGCGTGGCAAGAGGGTGCTTGAGATAAACCCAAGGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGGAGAGTGGTTTCCTGCTCAGTGACCCCAAGCATTTTGCCTCTAATATCTATGATTCAGTGAAGTCAAGCCTAAACATCAGCCCTGATGCAGCAGTGGAAGAGGAAGATGAAGCAGAGGAGGCTGAGGCTGAGGCTGAGGCTGAGGCAGAATCGAAAGAAGCTTCCACTTCCAAGGGTGATGATGCTGCTGCTGATGCAGACACACTCAAGGATGAGTTGTAG 2457 0.4225 MRKWTIPSALLLLCLLCLLPDQGRKIHANAEADSEELVNPPKVEEKIGAVPNGLSTDSDVAKREAESISKRNLRANAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDTAKLDIQIKLDKEKKILSIRDRGIGMTKDDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDVWNEPLGRGTEIRLHLREEAGEYLEEAKLKELVKRYSEFINFPIYLWASKEVDVEVPADEDESSDEEETSDSSSSEEEVEDEDAEKKPKSKTVKETTYEWELLNDVKAIWLRNPKEVTEEEYTKFYQSLAKDFSEEKPLSWSHFTAEGDVEFKAVLFVPPKAPQDLYESYYNTKKSNLKLYVRRVFISEEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIADEDPDESNDKDKKDVEKSSDDDEKKGQYAKFWNEFGKSIKLGIIEDASNRNRLAKLLRFESTKSGGKLASLDQYISRMKPGQKDIFYITGNSKEQLEKSPFLERLTKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKDLKESFKDLTKWWKSALASENVDDVKISNRLADTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELQERVVKDSEDEGVKKTAQLMYQTALMESGFLLSDPKHFASNIYDSVKSSLNISPDAAVEEEDEAEEAEAEAEAEAESKEASTSKGDDAAADADTLKDEL* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1253 818 Coils Coil 776 803 - -
Vvi18g1253 818 CDD HATPase_Hsp90-like 87 277 IPR020575 -
Vvi18g1253 818 Gene3D - 342 535 - -
Vvi18g1253 818 FunFam endoplasmin homolog 342 535 - -
Vvi18g1253 818 Pfam Hsp90 protein 259 795 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi18g1253 818 SUPERFAMILY HSP90 C-terminal domain 642 764 IPR037196 -
Vvi18g1253 818 FunFam Endoplasmin-like isoform B 630 776 - -
Vvi18g1253 818 MobiDBLite consensus disorder prediction 293 329 - -
Vvi18g1253 818 SUPERFAMILY Ribosomal protein S5 domain 2-like 343 623 IPR020568 -
Vvi18g1253 818 FunFam endoplasmin homolog 536 623 - -
Vvi18g1253 818 SMART HKATPase_4 100 257 IPR003594 -
Vvi18g1253 818 MobiDBLite consensus disorder prediction 793 818 - -
Vvi18g1253 818 MobiDBLite consensus disorder prediction 482 504 - -
Vvi18g1253 818 MobiDBLite consensus disorder prediction 293 318 - -
Vvi18g1253 818 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi18g1253 818 Hamap Chaperone protein HtpG [htpG]. 75 766 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi18g1253 818 PIRSF HSP90_HTPG 51 809 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi18g1253 818 Gene3D - 630 776 IPR037196 -
Vvi18g1253 818 Gene3D - 65 300 IPR036890 -
Vvi18g1253 818 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Vvi18g1253 818 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Vvi18g1253 818 MobiDBLite consensus disorder prediction 775 792 - -
Vvi18g1253 818 FunFam Heat shock protein 90 69 303 - -
Vvi18g1253 818 Gene3D - 536 623 - -
Vvi18g1253 818 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Vvi18g1253 818 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Vvi18g1253 818 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Vvi18g1253 818 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Vvi18g1253 818 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Vvi18g1253 818 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Vvi18g1253 818 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Vvi18g1253 818 MobiDBLite consensus disorder prediction 772 818 - -
Vvi18g1253 818 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 71 792 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1253 Vvi-Chr18 12502093 12507768 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1253 K09487 - vvi:100267648 1457.2