Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1252 ATGAATCCCATCTTCTCCTGTTTCTTCTCTCGGTGCTCGGCTCTCGTCTTGACTCTACTCTTGAGAGGTGTTTCGGGGACCACGTTTGCGATCACAAATAGATGTGATTTCACGGTATGGCCTGGAATACTATCCAATGCGGGAAGCTCCAGATTGGAAACTACCGGATTCGAACTCTCTTCCGGCGGGTCTCGTTCCCTTGAAGTTCCAGTAGGCTGGTCAGGGAGGTTCTGGGGCAGAAGCGGTTGCACATTCGACGCCACCGGCCACGGGAACTGCACAACCGGGGACTGCGGCTCAGGGCAGGTGGAGTGCAACGGTGCTGGCGCAATCCCTCCGGCGACTCTAGCCGAGTTCACAATCGGCTCCGGGAGCCAGCAAGACTTCTACGACGTCAGCTTGGTAGATGGCTACAACCTACCCATGATCGTGGAAGCGAGTGGTGGCACCGGCTCATGCGCGTCGACGGGCTGCGTCAACGACTTGAACCAGCAGTGTCCGGCGGAGCTGAAGGCCAACGAGGGCCAGGCGTGTAATAGTGCATGTGGGGCATTTGCGAAACCGGAGTACTGTTGTAGCGGTGCGTATGGATCACCGACGACTTGTAAGCCGTCGGTGTACTCAGAGATATTCAAAACGGCATGCCCCAAGTCGTATAGCTACGCTTACGACGACGCTACGAGTACATTTACGTGTAGCGGAGCAAATTATATGATTACATTCTGCCCTTCATTGACAAGTCAAAAGTCTTCAAGGGATTCATCCCCGGTGACCACAGGAACTCCGGCTGCTGGGTCATCAGCGGAGGACCCGACGGTGCTCAATGCTCCATGGTTATCAAACTTCATCACCGGGGACTCCTCCAGGACCCTTTCTTCTTTTGCACTGCATTCTACATTGATTGCTTCTGCAACTTCCTCTCTCCTTCTCTTTTTTCTTTCTTTATAG 948 0.539 MNPIFSCFFSRCSALVLTLLLRGVSGTTFAITNRCDFTVWPGILSNAGSSRLETTGFELSSGGSRSLEVPVGWSGRFWGRSGCTFDATGHGNCTTGDCGSGQVECNGAGAIPPATLAEFTIGSGSQQDFYDVSLVDGYNLPMIVEASGGTGSCASTGCVNDLNQQCPAELKANEGQACNSACGAFAKPEYCCSGAYGSPTTCKPSVYSEIFKTACPKSYSYAYDDATSTFTCSGANYMITFCPSLTSQKSSRDSSPVTTGTPAAGSSAEDPTVLNAPWLSNFITGDSSRTLSSFALHSTLIASATSSLLLFFLSL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1252 315 FunFam THAUMATIN-LIKE PROTEIN 1 27 243 - -
Vvi18g1252 315 ProSiteProfiles Thaumatin family profile. 26 243 IPR001938 -
Vvi18g1252 315 PANTHER OS03G0233200 PROTEIN 17 243 IPR001938 -
Vvi18g1252 315 SMART tha2 29 243 IPR001938 -
Vvi18g1252 315 Pfam Thaumatin family 33 243 IPR001938 -
Vvi18g1252 315 MobiDBLite consensus disorder prediction 247 269 - -
Vvi18g1252 315 Gene3D Thaumatin 27 243 IPR037176 -
Vvi18g1252 315 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Vvi18g1252 315 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Vvi18g1252 315 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Vvi18g1252 315 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Vvi18g1252 315 CDD TLP-PA 28 242 - -
Vvi18g1252 315 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
Vvi18g1252 315 SUPERFAMILY Osmotin, thaumatin-like protein 27 244 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1252 Vvi-Chr18 12488788 12490747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1252 15 251 Receptor kinase-like Gene Family AT5G38280 49.593 1.00e-78 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1252 - - vvi:100242003 608.986