Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1251 ATGGCTAAGTTATCAATAATGTTAATTTCTGTGTTCACAATTACTATTCATCATTTGTGGATACCAGGAGTGTTATCAGCAACTTACACTATAGTAAACAAATGCGACCAAACGGTATGGCCGGGCATTCTTTCAAACTCTGATTCAGCACAGCTCTCAACCACTGGTTTTACCCTTCAGAAAGGCGAGTCCAAGACCATAACGGTGCCTTCCTCATGGGGCGGTCGCTTCTGGGGCAGGACCCATTGTACCCAAGACTCTACCGGAAAGTTCTCTTGTGTCACCGGTGACTGCGGATCCGGAAAGCTAGAATGCGCAGGTGGTGGCGCTGCTCCCCCTGCTACACTTGCGGAGTTTAAGCTCAACGGCTACGGAGGCCTCGACTTCTACGACGTGAGCTTGGTTGATGGGTATAACCTTCCTTTGATGGTGGTCCCACAGGGCGGCACCGGGGGGAACTGTACCAAAACCGGGTGCGAGGTGGATCTGAACGGCGCTTGCCCCTCTGAGCTCAAGGTTACGAGCACCGACGGAAAAGAGAACGTTGCGTGCAAGAGCGCGTGCGAGGCGTTCCGGGAACCTCAATACTGCTGCAGCGGCGCCTATGCGACTCCCGATAAGTGCACTCCCTCTTCGTACTCTCAGCTGTTCAAGAGCGCATGCCCACGCGCTTACAGCTACGCATACGACGATTCCACCAGCACATTCACTTGTGCCGGCGCAGATTACATGATCACCTTCTGCCCCTCTCCTAAAACCAGCCAGAAAGCATCGCAAGGGCAGAACGAGGAAACGCCGGCGACGACTCAGATCAACAGCACAATGGTGTACGAAGGCGCTCTAGAGGATGACAGCTCTTCAGCGTCACCCCCCACGTGTACAGGATCAGGACTGATTGCCGGTGCCGTATCCATCGGGACCGCTCTTCTAACTTCCTGGCTGACCTTATAG 951 0.5394 MAKLSIMLISVFTITIHHLWIPGVLSATYTIVNKCDQTVWPGILSNSDSAQLSTTGFTLQKGESKTITVPSSWGGRFWGRTHCTQDSTGKFSCVTGDCGSGKLECAGGGAAPPATLAEFKLNGYGGLDFYDVSLVDGYNLPLMVVPQGGTGGNCTKTGCEVDLNGACPSELKVTSTDGKENVACKSACEAFREPQYCCSGAYATPDKCTPSSYSQLFKSACPRAYSYAYDDSTSTFTCAGADYMITFCPSPKTSQKASQGQNEETPATTQINSTMVYEGALEDDSSSASPPTCTGSGLIAGAVSIGTALLTSWLTL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1251 316 FunFam THAUMATIN-LIKE PROTEIN 1 27 249 - -
Vvi18g1251 316 PIRSF PR5 1 286 IPR001938 -
Vvi18g1251 316 Pfam Thaumatin family 33 249 IPR001938 -
Vvi18g1251 316 CDD TLP-PA 28 248 - -
Vvi18g1251 316 ProSiteProfiles Thaumatin family profile. 26 249 IPR001938 -
Vvi18g1251 316 SMART tha2 29 249 IPR001938 -
Vvi18g1251 316 Gene3D Thaumatin 27 249 IPR037176 -
Vvi18g1251 316 PANTHER OS03G0233200 PROTEIN 18 249 IPR001938 -
Vvi18g1251 316 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Vvi18g1251 316 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Vvi18g1251 316 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Vvi18g1251 316 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Vvi18g1251 316 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
Vvi18g1251 316 SUPERFAMILY Osmotin, thaumatin-like protein 28 250 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1251 Vvi-Chr18 12468485 12470015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1251 9 273 Receptor kinase-like Gene Family AT5G38280 52.239 1.05e-94 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1251 - - vvi:100257373 641.343