Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1248 ATGGCTACCGCTGTCAATGCTGCAGTCTCTCTTCCATCATCGAAGTCATCTTCTCTCCCCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATTAAAGCTCAGGTCACTACAGAGGCTCCTGCAAAAGTAGAGAAGGTTTCTAAGAAAAACGATGAGGGTGTGGTTGTTAACAAGTTCAGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGGGGAAGTCCCATATAGAGAGGGGCAATCTATTGGTGTGATTCCGGATGGTATAGACAAGAATGGGAAACCCCACAAGCTTAGACTCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTGTTTCATTGTGTGTAAAAAGGCTTGTCTACACCAATGACCAAGGAGAGATAGTTAAAGGAGTTTGCTCAAATTTCTTGTGTGACTTGAAGCCTGGGGCTGATGTCAAAATCACAGGACCTGTTGGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTGTCATAATGCTTGCAACTGGTACTGGCATTGCTCCTTTTCGCTCATTCTTGTGGAAAATGTTCTTCGAGAAATATGAAGACTACAAGTTTAAAGGGTTGGGTTGGCTCTTCTTGGGTGTCCCAACAACTAGCTCCCTGCTGTACAAGGACGAGTTTGAGAAGATGAAGGAGAAGGCCCCAGAAAACTTTAGGGTTGACTATGCTGTCAGCAGAGAGCAAACAAATGAGAAGGGCGAGAAAATGTACATTCAAACCCGGATGGCTCAATATGCAGAGGAGCTATGGGAGTTACTTAAAAAGGATAATACCTATGTGTATATGTGTGGGCTGAAGGGAATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGAATGTTGAAGTCTATTGA 1092 0.4377 MATAVNAAVSLPSSKSSSLPIRNHIIVSPERINFNKCFLYSRNVCVGRKVVTIKAQVTTEAPAKVEKVSKKNDEGVVVNKFRPKNPYIGKCLLNTKITGDDAPGETWHMVFTTEGEVPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDTKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKYEDYKFKGLGWLFLGVPTTSSLLYKDEFEKMKEKAPENFRVDYAVSREQTNEKGEKMYIQTRMAQYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAARDGIDWTEYKRQLKKSEQWNVEVY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1248 363 SUPERFAMILY Riboflavin synthase domain-like 62 207 IPR017938 -
Vvi18g1248 363 Gene3D Translation factors 54 200 - -
Vvi18g1248 363 Gene3D - 201 363 IPR039261 -
Vvi18g1248 363 CDD CYPOR_like_FNR 79 363 - -
Vvi18g1248 363 PANTHER - 2 363 IPR015701 GO:0016491
Vvi18g1248 363 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 293 309 IPR001709 GO:0016491
Vvi18g1248 363 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 142 149 IPR001709 GO:0016491
Vvi18g1248 363 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 257 268 IPR001709 GO:0016491
Vvi18g1248 363 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 119 129 IPR001709 GO:0016491
Vvi18g1248 363 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 179 188 IPR001709 GO:0016491
Vvi18g1248 363 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 317 325 IPR001709 GO:0016491
Vvi18g1248 363 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 215 234 IPR001709 GO:0016491
Vvi18g1248 363 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 209 363 IPR039261 -
Vvi18g1248 363 FunFam Ferredoxin--NADP reductase, chloroplastic 68 200 - -
Vvi18g1248 363 Pfam Oxidoreductase NAD-binding domain 216 330 IPR001433 GO:0016491
Vvi18g1248 363 PIRSF Frd-NADP+_RD 1 363 IPR015701 GO:0016491
Vvi18g1248 363 PIRSF FNR-PetH 3 363 IPR035442 GO:0016491
Vvi18g1248 363 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 84 206 IPR017927 GO:0016491
Vvi18g1248 363 FunFam Ferredoxin--NADP reductase, chloroplastic 201 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1248 Vvi-Chr18 12453799 12456501 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1248 K02641 - vvi:100252241 729.169