Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1231 ATGTCTCCAATTCCCATGGATGTGTATTCAAATGGAAATGTGAAAAATCTTGAGACAGCATCCACCACTGTTCAAATTGATGACTCTGATTTTTTGAGGTTATTGGACAGACCCAGACCCATCAGCATAGAAAGGAATAGATCATTTGAAGAGAAGTCATTCAATGAATTGTCTTCCACTCTATCGCCCCTTCTTTTTCATAGAAATGTGGAGAAGAACTCCTTCCACATATTTGACCTTCTTGATCACACATTTTCTCCTGTTAGGTCCAGTTTGAACACACCCAGATCAAACCATTGCTTTGAGCCACATCCTGTGTTCACTGATGCATGGGAGGCTTTGAGGCGTTCACTGGTTTACTTCCGTGGACAACCGGTTGGGACCATCGCTGCGATCGACCATTCTTCTGATGAACTTAACTATGATCAGGTGTTTGTGAGAGACTTTGTCCCTAGTGCTTTGGCTTTCTTGATGAATGGAGAACCTGAAATAGTTAAGAATTTTATCTTGAAAACTCTTCGTCTCCAATCATGGGAGAAAAAGGTTGACCAGTTCAAGCTAGGAGAAGGAGTAATGCCAGCAAGCTTTAAAGTATTTCACGACCCTGTGAGGAACTATGAGACCCTAATTGCAGATTTTGGCGAGAGTGCAATTGGAAGAGTGGCGCCTGTTGATTCTGGATTTTGGTGGATCATATTACTTCGTGCCTATACAAAGTCCACAGGGGACTCTTCCTTAGCTGAGATGCCTGAGTGCCAAAGGGGCATGCGTCTTATCCTGAGTCTATGTCTTTCAGAAGGCTTTGATACATATCCAACTCTTCTCTGTGCGGATGGCTGTTGTATGATTGACCGCAGAATGGGTGTATATGGGTATCCTATTGAAATACAAGCACTTTTCTTTATGGCTTTAAGATGTGCATTGCTTTTGCTTAAGCAAGATGATAAGGGCAAGGAGTTCGTGGAGCTAATATCTAAACGCCTCCATGCTTTAAGCTACCACATGCAAAGCTACTTTTGGCTGGACATAAAGCAGCTCAATGATATATATCGGTATAAAACAGAGGAGTACTCCCATACAGCAGTTAATAAATTCAATGTAATGCCCGATTCTCTTCCGGATTGGGTGTTTGATTTCATGCCAAGTCGTGGTGGTTACTTCATCGGAAATGTAAGTCCTGCGAAAATGGATTTCCGTTGGTTTTGCCTGGGAAATTGTGTTGCAATCTTGTCGTCTTTGGCAACTCCTGAGCAATCTTCAGCCATCATGGATCTTATTGAATCACGCTGGCAAGAGTTGGTTGGAGAAATGCCACTTAAGATCTGTTATCCAGCCTTTGAAAGTCATGAATGGAGAATTGTCACTGGCTGTGACCCTAAGAATACAAGGTGGAGTTACCACAATGGTGGATCCTGGCCAGTGCTTATATGGCTTCTTACCGCCGCATGTATTAAGACTGGACGTCCACAGATTGCAAGACGAGCCATTGAACTAGCTGAGAGCCGGTTGTTAAAAGATAACTGGCCGGAGTATTATGATGGCAAACTTGGTCGGTATATTGGAAAGCAGGCTCGAAAGTTCCAGACCTGGTCCATTGCTGGCTACTTGGTGGCTAAGATGATGCTTGATGATCCATCTCATTTGGGCATGATATCTCTGGAAGAAGATAAACAGCTGAAGCCCCTTTTTAAAAGATCCTTGTCATGGTCCCATTGA 1716 0.4324 MSPIPMDVYSNGNVKNLETASTTVQIDDSDFLRLLDRPRPISIERNRSFEEKSFNELSSTLSPLLFHRNVEKNSFHIFDLLDHTFSPVRSSLNTPRSNHCFEPHPVFTDAWEALRRSLVYFRGQPVGTIAAIDHSSDELNYDQVFVRDFVPSALAFLMNGEPEIVKNFILKTLRLQSWEKKVDQFKLGEGVMPASFKVFHDPVRNYETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLAEMPECQRGMRLILSLCLSEGFDTYPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKQDDKGKEFVELISKRLHALSYHMQSYFWLDIKQLNDIYRYKTEEYSHTAVNKFNVMPDSLPDWVFDFMPSRGGYFIGNVSPAKMDFRWFCLGNCVAILSSLATPEQSSAIMDLIESRWQELVGEMPLKICYPAFESHEWRIVTGCDPKNTRWSYHNGGSWPVLIWLLTAACIKTGRPQIARRAIELAESRLLKDNWPEYYDGKLGRYIGKQARKFQTWSIAGYLVAKMMLDDPSHLGMISLEEDKQLKPLFKRSLSWSH* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1231 571 Gene3D - 134 539 IPR012341 GO:0005975
Vvi18g1231 571 Pfam Alkaline and neutral invertase 110 545 IPR024746 GO:0033926
Vvi18g1231 571 SUPERFAMILY Six-hairpin glycosidases 111 538 IPR008928 GO:0005975
Vvi18g1231 571 PANTHER - 74 561 IPR024746 GO:0033926
Vvi18g1231 571 FunFam probable alkaline/neutral invertase B 135 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1231 Vvi-Chr18 12292349 12294516 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1231 - - vvi:100248859 1179.47