Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1230 ATGAAGGGAAAGAGAACGCCGATCCACGCAGTGGCAACATGGGTGAGGAAACAACCGCCAAAGGTGAAGGCGTTTCTGGCGGTGGCTTCAGGGATTGTGGCAGTGATATTCCTCCGAATGGTAGTACGGGATCACGACAGTCTCTTTGTTGCTGCCGAGGCTGTTCACGCCCTCGGTATCTCTATTCTCATTTACAAGCTCACGAAGGAGAGGACTTGTGCCGGACTTTCGCTAAAATCACAAGAACTAACTGCTATATTTTTAGCTGTTAGACTGTACTGCAGTTTGGTTATGGAATATGATATACACACCATACTTGATTCAGCTACATTGGGAACAACCCTGTGGGTTATTTATATGATTCGTTTTAAACTGATGTCCAGCTATATGGATGACAAGGACAACTTTAAAATTTATTATGTGGTCATACCTTGTGCTCTACTGTCTCTTATTATTCATCCATCCACTCCACATCATATTATAAACAGGGTTTGCTGGGCTTTCTGTGTTTATTTGGAAGCTATCTCTGTACTACCCCAACTACGTGTGATGCAGAACACAAAGATTGTTGAGCCCTTTACGGCTCATTATGTATTTGCACTGGGAGTTGCAAGGTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTAATGGATTCGCAGGGACGCATCCTAACAGCATTGGGGTATGGACTATGGCCTTCAATGGTCCTCCTTTCAGAAATTGTCCAGACTTTTATTTTGGCGGACTTCTGCTATTACTATGTGAAGAGCCTTGTAGGTGGACAACTGGTGCTACGCCTCCCCTCTGGAGTGGTGTGA 819 0.4493 MKGKRTPIHAVATWVRKQPPKVKAFLAVASGIVAVIFLRMVVRDHDSLFVAAEAVHALGISILIYKLTKERTCAGLSLKSQELTAIFLAVRLYCSLVMEYDIHTILDSATLGTTLWVIYMIRFKLMSSYMDDKDNFKIYYVVIPCALLSLIIHPSTPHHIINRVCWAFCVYLEAISVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVMDSQGRILTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSLVGGQLVLRLPSGVV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1230 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi18g1230 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi18g1230 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi18g1230 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi18g1230 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi18g1230 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016020|GO:0046923
Vvi18g1230 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 48 270 IPR000133 GO:0006621|GO:0016020|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1230 Vvi-Chr18 12281671 12286855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1230 5 272 Miscellaneous Gene Families AT2G21190 79.851 1.32e-168 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1230 - K10949 vvi:100243720 543.117