Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1226 ATGATCCGATTCATAATTCTACAGAACAGGCAGGGCAAGACCCGCCTCGCCAAGTACTATGTTCCTCTTGAAGAATCCGAGAAGCACAAGGTCGAATACGAGGTTCACCGATTGGTTGTCAACCGGGATCCCAAGTTCACTAACTTCGTTGAGTTCCGTACACACAAGGTAATCTACAGGCGATATGCTGGATTATTTTTCTCACTGTGTGTTGATATGACAGATAATGAGTTGGCATATTTAGAGTGCATCCATCTGTTTGTGGAAATACTGGATCATTTCTTCAGCAATGTGTGCGAGCTAGATTTGGTATTTAATTTCCACAAGGTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGGCCATCATAGAGAGGATGGGGGAATTGGAAAAGCAAGAGTGA 429 0.4266 MIRFIILQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDMTDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKQE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1226 142 PIRSF AP_complex_sigma 1 142 IPR016635 GO:0015031
Vvi18g1226 142 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 140 IPR016635 GO:0015031
Vvi18g1226 142 Pfam Clathrin adaptor complex small chain 1 141 IPR022775 -
Vvi18g1226 142 FunFam AP complex subunit sigma 1 142 - -
Vvi18g1226 142 CDD AP2_sigma 1 140 IPR027156 GO:0016192|GO:0030122|GO:0035615|GO:0072583
Vvi18g1226 142 Gene3D - 1 142 - -
Vvi18g1226 142 SUPERFAMILY SNARE-like 1 135 IPR011012 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1226 Vvi-Chr18 12257730 12261026 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1226 K11827 - vvi:100260827 288.885