Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1225 ATGTCGGTTTCCGCCGTCGGATCTTTCTGGCTTTCCCCATCTCCCGGGAAGTTGCCACGGCCCAGGATGGTCGTCCGATCTAGCGCCGTCTCCGTCGCTCCAATTTTGACTCATTTACAGAAGCAGTGTGCCACTCCTTTGCCTGTTCTCCGCCACGTGGCAGACGCCATGGCCGCTGATATGCGGGCCGGGCTTGCTGTCGACGGTGGTAGTGATCTCAAGATGATTCTCAGCTATGTCGATACTTTCCCCACTGGGAATGAGAAAGGCTTGTTTTATGCTTTGGATCTTGGTGGCACGAACTTCCGAGTGCTGAGGGTGCAATTAGGGGGGAAGGATGAGAGAGTGATTGCCACTGAATTTGAGCAAGTAACAATTCCTCAAGAGTTAATGTTTGGTACCTCGGAGGAACTTTTCGATTTTATTGCTTGCGGACTGGCGAATTTTGCAAAGAAGGAGGGTGGAAAATTTCACCTGCCGAGTGGAAGGAAAAGAGAGATTGGCTTTACATTTTCTTTCCCAGTCAAGCAAACATCAATTGACTCTGGCATACTAATGAAGTGGACAAAGGGTTTTGCTGTCTCTGGAACGGCAGGAAGAGATGTGGTTGCTTGTCTAAATGAAGCAATGGAAAGGCAGGGACTAGATATGCAGGTGTCAGCCCTGGTTAATGACACTGTAGGAACATTGGCCGGAGCAAGATACTGGGATGATGATGTAATGGTTGCTGTCATTTTAGGAACTGGAACCAATGCGTGCTATGTAGAAAGAACAGATGTTATTCCTAAACTACAGGGCCAGATGTCTTCTTCTGGAAGAACGATTATTAGTACTGAGTGGGGGGCATTCTCAAATGGTCTACCTTTAACTGAGTTTGACAGAGATATGGATGCTGCTAGTATCAATCCTGGTGAGCAGATATTTGAGAAGACAATCTCTGGTATGTACCTTGGTGAAATTGTAAGAAGGGTGCTACTCAAGATGGCTGAAGCAGGTGCTTTGTTTGGCGAATATGTCTCAGAAAAGTTATCCACACCTTTCATACTCAGGACCCCAGACATATGTGCAATGCAGCAGGACAATTCTGACCATCTGGATGCTGTTGGAGCAATCCTGTATGATGTAGCTGGGGTAAAGTCAGACCTGAGTGTCAGAAAGATGGTCGTGGAGGTTTGTGACACCATCGTGAAGCGAGGTGGGCGCTTGGCTGGTGCAGGCATTGTAGGGATTCTCCAAAAGATGGAGGAAGATTCAAAAGACCTCATCTTTGGGAAGAGAACCGTGGTGGCCATGGATGGAGGCCTATATGAGAACTATCCCCAGTATAGAAGATACCTCAAAGAAGCCGTGACAGAGCTTCTGGGGTTGGAGATGTCAAAGAATGTAGTCATAGAACATTCAAAAGACGGGTCTGGGATTGGAGCTGCTCTCTTGGCTGCTTCAAACTCCAAGTATTAA 1458 0.4739 MSVSAVGSFWLSPSPGKLPRPRMVVRSSAVSVAPILTHLQKQCATPLPVLRHVADAMAADMRAGLAVDGGSDLKMILSYVDTFPTGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVTIPQELMFGTSEELFDFIACGLANFAKKEGGKFHLPSGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGRDVVACLNEAMERQGLDMQVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDVIPKLQGQMSSSGRTIISTEWGAFSNGLPLTEFDRDMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAEAGALFGEYVSEKLSTPFILRTPDICAMQQDNSDHLDAVGAILYDVAGVKSDLSVRKMVVEVCDTIVKRGGRLAGAGIVGILQKMEEDSKDLIFGKRTVVAMDGGLYENYPQYRRYLKEAVTELLGLEMSKNVVIEHSKDGSGIGAALLAASNSKY* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1225 485 CDD NBD_sugar-kinase_HSP70_actin 94 256 - -
Vvi18g1225 485 ProSiteProfiles Hexokinase domain profile. 30 480 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Vvi18g1225 485 Pfam Hexokinase 242 480 IPR022673 GO:0005524|GO:0005975|GO:0016773
Vvi18g1225 485 Pfam Hexokinase 38 235 IPR022672 GO:0005524|GO:0005975|GO:0016773
Vvi18g1225 485 FunFam Phosphotransferase 78 246 - -
Vvi18g1225 485 Gene3D - 78 479 - -
Vvi18g1225 485 SUPERFAMILY Actin-like ATPase domain 239 484 IPR043129 -
Vvi18g1225 485 SUPERFAMILY Actin-like ATPase domain 22 237 IPR043129 -
Vvi18g1225 485 FunFam Phosphotransferase 214 468 - -
Vvi18g1225 485 Gene3D - 56 468 - -
Vvi18g1225 485 PRINTS Hexokinase family signature 465 481 - -
Vvi18g1225 485 PRINTS Hexokinase family signature 219 235 - -
Vvi18g1225 485 PRINTS Hexokinase family signature 388 410 - -
Vvi18g1225 485 PRINTS Hexokinase family signature 93 109 - -
Vvi18g1225 485 PRINTS Hexokinase family signature 167 192 - -
Vvi18g1225 485 PRINTS Hexokinase family signature 306 328 - -
Vvi18g1225 485 PRINTS Hexokinase family signature 242 256 - -
Vvi18g1225 485 ProSitePatterns Hexokinase domain signature. 167 192 IPR019807 GO:0004396|GO:0005524|GO:0006096
Vvi18g1225 485 PANTHER HEXOKINASE 33 481 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1225 Vvi-Chr18 12252612 12256877 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1225 K00844 - vvi:100255753 936.021