Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1208 ATGGGACAGCGTTCTAAGTCCAAAGGATGGTGCGGCTGGTTTATTGTTCTAGTTGTGGCGGCTCTCGTTGCCGCCGTCATCGTAATCTCTATCAGGAAGAGATCGGACCACTCTGACAAGGCTGCTCCGGTGCCTGGGCCTCCCGGCGCCATTGATAAGAAATACTCCGACGCTCTCAAACTTGCCATGCAGTTCTTCGATATACAAAAATCTGGTAAGTTGGAAAACAATAAGATATCATGGAGAGGAAATTCTGCACTTCAAGACGGAAGTGAAGCTAAATTAGATCTTTCTAAAGGGATGTATGATGCTGGGGATCACATAAAGTTTGGTTTTCCAATGGCTTTTACTGCCACAGTGTTGTCATGGGCGATCCTTGAGTATGGAGATCAAATGGATGTCGTGGATCAGTTGGAACCTGCCCAAGACTCTCTCAAATGGATCACAGACTACCTTATCAATGCTCATCCTTCCGAGAATGTGCTCTATATTCAGGTGGGAGATCCTGAAGCAGACCATAAATGTTGGGAAAGGCCTGAAAACATGAAAGAGAAAAGACCTCTCACACAGGTGAACACATCTGCTCCAGGAACAGATGTTGCTGCTGAAACTGCAGCAGCCATGGCATCAGCATCTCTGGTGTTTAAGACAAGCGACTCTTCCTATTCAGACACACTTCTTAAGCATGCCAAACAACTGTTTAATTTTGCTGACAAATACAGAGGTTCCTACAGTGTCAGCATCCCTGAAGTCCAGAAATATTACAATTCAACAGGATATGGAGATGAGCTCTTGTGGGCAGCTAGCTGGCTCTATCATGCAACAGGAGATCAAGCATACCTTAAATATACTGTGCAAAATGGAAATGCCTTTGCTAACTGGGGAAGTCCAACCTGGTTTAGCTGGGATAATAAGCTAGCAGGAACTCAGGTTCTTTTATCCAGGGTAAGCTTCTTTGGAGGAAAAGGCATCTCAAACTCCGAGAATTCTGGCCTCCAGAAGTACAGGAAAACAGCTGAGGCTGTTATGTGTGGCCTCCTTCCAAAATCTCCGACTGCCACAATCAGCAGAACAGACAGTGGCCTGATATGGGTCAGTGAATGGAATGCTTTGCAACATCCTGTGGCTTCTGCATTTTTAGCCGTTCTTTATAGTGATTACATGCTTTCATCTCGGACTGCAAAGCTATCCTGTGATGGAGATTCCTACAAACCATCCGACCTTCGGCACTTTGCTATTTCACAGGTTAATTATGTCCTGGGAGAGAATCCTATGAAAATGAGCTATCTAGTTGGGTATGGGGATAAATACCCACAATATGTGCACCATAGGGGTGCCTCAATTCCAGCTGATGCAACCACTGGCTGCTCTGATGGCTTCAAGTGGCTCAAATCAAAGGACCCCAATCCCAATGTTGCTACTGGAGCTCTTGTTGGCGGGCCCTTCAAGAACGAGTCATTTGTTGATTCTCGAAACAACTCCATGCAAGTGGAACCAAGCACATACAATGGTGCTGTCATTGTTGGCCTCCTTTCGAGTTTGGTTACCACCTCTTCAGTGGTTCAATCTTTCACCTAA 1578 0.4563 MGQRSKSKGWCGWFIVLVVAALVAAVIVISIRKRSDHSDKAAPVPGPPGAIDKKYSDALKLAMQFFDIQKSGKLENNKISWRGNSALQDGSEAKLDLSKGMYDAGDHIKFGFPMAFTATVLSWAILEYGDQMDVVDQLEPAQDSLKWITDYLINAHPSENVLYIQVGDPEADHKCWERPENMKEKRPLTQVNTSAPGTDVAAETAAAMASASLVFKTSDSSYSDTLLKHAKQLFNFADKYRGSYSVSIPEVQKYYNSTGYGDELLWAASWLYHATGDQAYLKYTVQNGNAFANWGSPTWFSWDNKLAGTQVLLSRVSFFGGKGISNSENSGLQKYRKTAEAVMCGLLPKSPTATISRTDSGLIWVSEWNALQHPVASAFLAVLYSDYMLSSRTAKLSCDGDSYKPSDLRHFAISQVNYVLGENPMKMSYLVGYGDKYPQYVHHRGASIPADATTGCSDGFKWLKSKDPNPNVATGALVGGPFKNESFVDSRNNSMQVEPSTYNGAVIVGLLSSLVTTSSVVQSFT* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1208 525 Gene3D - 52 518 IPR012341 GO:0005975
Vvi18g1208 525 FunFam Endoglucanase 51 519 - -
Vvi18g1208 525 SUPERFAMILY Six-hairpin glycosidases 53 516 IPR008928 GO:0005975
Vvi18g1208 525 Pfam Glycosyl hydrolase family 9 55 511 IPR001701 GO:0004553|GO:0005975
Vvi18g1208 525 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 418 444 IPR018221 -
Vvi18g1208 525 PANTHER ENDO-1,4-BETA-GLUCANASE 17 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1208 Vvi-Chr18 12086525 12090737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1208 1 524 Glycoside Hydrolase AT1G75680 72.676 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1208 - - vvi:100262603 1001.12