Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1207 ATGGAAACTCTTCTCCCCTCCAGATTCAAACGTGTCTGTGTTTTCTGTGGTAGCAGCCCTGGCAAGAATCCCAGCTACCAGCTCGCCGCTATTCAGCTTGCCAACCAACTGGTTGAAAGGAAAATCGACTTGGTTTATGGTGGAGGGAGCATTGGCTTGATGGGTCTCGTCTCCCAAGCTGTCTACGATGGTGGCCGCCACGTATTGGGAGTGATTCCAAAGACTCTCATGCCCAGAGAGATTACAGGAGAAACTGTTGGAGAAGTGAGAGCTGTGTCAGGAATGCACCAAAGGAAAGCTGAAATGGCTCGTCAAGCCGACGCATTTATTGCCTTACCAGGTGGGTACGGGACCTTGGAAGAATTGTTGGAAGTCATCACATGGGCTCAGCTGGGTATTCACGATAAGCCGGTGGGATTATTGAACGTTGATGGGTACTACAACTCACTGCTATCCTTCATAGACAAAGCGGTAGATGAAGGGTTTATAACAGCAGCTGCCCGTCAAATTATTGTGTCTGCCCCGACTGCCCAAGAACTTTTGTGCAAGCTCGAGGAATATGTTCCCAAGCATTCTGGGGTTGCCCCCAAGTTGAGTTGGGAGATGGAGCAACAGCTTGGCTACGCGACCAAGTCAGACATAGCTCGTTGA 651 0.5008 METLLPSRFKRVCVFCGSSPGKNPSYQLAAIQLANQLVERKIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGETVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFITAAARQIIVSAPTAQELLCKLEEYVPKHSGVAPKLSWEMEQQLGYATKSDIAR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1207 216 PANTHER LOG FAMILY PROTEIN YJL055W 6 211 - -
Vvi18g1207 216 FunFam CASP-like protein 1 186 - -
Vvi18g1207 216 Gene3D - 3 186 - -
Vvi18g1207 216 SUPERFAMILY MCP/YpsA-like 8 187 - -
Vvi18g1207 216 Pfam Possible lysine decarboxylase 54 183 IPR031100 -
Vvi18g1207 216 NCBIfam Rossman fold protein, TIGR00730 family 10 187 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1207 Vvi-Chr18 12073618 12075720 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1207 K22522 - vvi:100257475 429.483