Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1206 ATGGGAGTACCAGCGTTCTACCGGTGGCTGGCCGAGAAGTATCCGCTGGTGGTGGTGGATGTGATCGAAGAAGAACCAGTCGAAATAGATGGCATTTCGATTCCTGTCGACACCAGTAAACCTAACCCTAACAACATCGAATACGACAATCTATACCTGGACATGAATGGGATTATTCACCCCTGCTTTCATCCTGAAGACCGGCCTTCTCCAACAACTTTTGATGAAGTATTTCAGTGCATGTTTGACTACATCGATAGACTTTTTGTGATGGTACGACCCCGAAAGCTTCTGTACATGGCTATTGATGGTGTTGCTCCAAGGGCTAAAATGAATCAACAACGCTCTAGGCGTTTCAGAGCAGCCAAAGATGCAGCTGATGCGGCAGCTGAAGAAGAACGGTTACGTGAAGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCAAAACAACAGTCCCAAGTTTGTGATTCTAATGTTATCACTCCTGGAACTGAATTTATGGGTGTCCTGTCAGTTGCATTGCAGTACTATATTCATCTTAGACTAAACAATGATCCTGGATGGAAATCTATTAAGGTCATCCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAACACAAAATAATGTCATATATTCGTCTTCAAAGAAATCTTCCTGGTTTTGATCCAAATACACGGCATTGTTTGTATGGATTGGATGCAGATCTAATCATGTTGGCTTTAGCTACACATGAAGTTCATTTTTCAATCCTAAGAGAGATTGTGTTCACTCCTGGACAACAAGATAAATGTTTCATGTGCGGTCAAATGGGTCATTTAGCAGCTGATTGTGAAGGAAAGGCAAAGAGAAAGGCAGGGGAGTTTGATGAGAAAGGACAGTCTGCTAGTGTGGTCAAAAAGCCATACCAGTTTCTCAACATTTGGACTCTCAGAGAGTATTTGGAATATGAAATGAGAATCCCTAATCTTCCATTTGAGATTGATTTTGAACACATTGTGGATGACTTTATCTTCATGTGTTTCTTTGTTGGCAATGATTTTTTGCCACATATGCCCACATTGGAGATCCGTGAGGGTGCAATTAATTTGCTGATGGCAGTATACAAGAAGGAACTCAGGGCAATGGGTGGTTATTTGACTGACTCAAGCAAGCCAAATTTAAGCAATGTGGAGCATTTCATTCAGGCTGTAGGCTCCTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTACATCAGCGGCAGGCAGAGAGAATCAAGCGTGAGAAGGCACAGGCAAGAAGAGGAGATGACGCAGACCCTCAAGTTAAACCTGAATTTCTGGTTCCTGTTTCTCGGTATCATGGCTCTCGTCTTGCTTCAGCGCCAACACCTTCGCCATATCAACAACATGAGATTAAAAGCAAACAGTCTGGGACATCTGGTAGTCAGGGACGTAAAGTTGCACGTTTTTCTTCAGGAGCCACTGTTGGTGCTGCAATTGTTGAAGCTGAGAATGATCTTGAAACAGAATTGCACGATAACAAAGACGAACTGAAAGCAAAGCTGAAGGAGTTACTCCGCGAGAAATCTGATCTTTTTAACTCCAAAAATCCAGAGGAAGACAAGGTTAAATTGGGAGAGGCAGGTTGGAAAGAAAGGTATTATGAAGAAAAGTTCTCCACAAAAACTCCTGAGGAACAAGAAGCAATGCGGAACGATGTTGTTTTGAAGTACACAGAAGGCCTCTGTTGGGTTATGCACTATTACTATGAAGGGGTATGTTCTTGGCAATGGTTTTATCCTTATCACTATGCACCATTTGCTTCTGATCTCAAAGATCTTGGTCAGTTGAATATAAGCTTTGAACTGGGTTCTCCCTTCAAACCATTTAATCAGCTATTGGGAGTTTTTCCAGCTGCCAGCTCCCATGCACTTCCTGAGGAATATAGGAAATTGATGACTGATCCAAACTCACCTATTATTGATTTTTATCCAACAGATTTTGAGGTGGACATGAATGGCAAACGGTTTGCTTGGCAGGGTATTGCAAAATTGCCTTTCATTGATGAAGCTCGCCTCCTGGCAGAGGTTCAAAAAATTGAGCACACTTTAACGGAGGAGGAATTCCGGAGAAACAGCGTGATGTTTGACATGCTTTTTGTGGCTCTATCGCATCCTCTCTCTCCATATATATTTTCTCTTGATGATCGTTGCAAAAAATTGACCGACAACGAGCGCACGGAAGTCAAGGAACAACTTGATCCCAGAGCCAGTGGTGGGATGAATGGTTACATATCCCTTTGTGGTGGAGATCCTTGCCCTCCTATTTTCAGATCACCTATTGCTAGTTTGGAAGATATTATGGATAACCAAGTCATCTGTGCTATATACAGACTTCCAGATGCTCATAAGCACATTACTCGACCACCTGTTGGAGTTACATTCCCAAAGAAGATTGTTAGTGTGGGGGATCTGAAACCTGAACCTGTTCTGTGGCATGAAGACAATGGAAGAAGGCCCTGGGAAAATGGAAGACAAAACCTCCCTGGGACTATTTCTGGTCGACAGCTTGGGGAGGCAGCACATCGGCTTGTTGTTAATAGCTTACAAGTAAAGGCAGAACGTAATGGCTTTGGCGATCAGATGCACGCTCCACCACCTTATCCGGCAGCTCCATATGGTCCACCCCTTTCTTCCTACTCAGATAACAGGTACCATAATCAGGAGCATCATAGGATGGCGCTGCCTAGACCAGACTATTCTGATCAAACTTACCGTAGATCTTCAAACCCTGCTTCTGTAAGAAATCATTTTGACCACAGATATGATCAGCCACACGCTTCCTCAGCTACTGGCCATCACTACAATAGGTCCCCTGTACATGGATACTACCAACCAGGATTTCATCAGAATGATGGACCCGGGTACCATCCTAGACAAGAAGCACAAACTCACATTCCTGCTGGTGCCCAACTCCCTGGTCAGGGAGGTCACAACAGCCACCACGGTTATCAATCATATGGAGCTTCTAGTTATCATGAATGGGCCAGTGGCTGGCCCCCAGAGGGTAATAATCAGAGCAATCCCAGAGGCCATGGTCACCCTCAGGGCAATCCCAGAGGGTACGGTCATCCTCAACAATTAGGCAATCAGTACTCAGTGTTAGACAGAAGGGCAAACAGAGGGCCGCCACCACCTGGTTATGATCGCCGCTAG 3198 0.4422 MGVPAFYRWLAEKYPLVVVDVIEEEPVEIDGISIPVDTSKPNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEKEGRKLPPKQQSQVCDSNVITPGTEFMGVLSVALQYYIHLRLNNDPGWKSIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEVHFSILREIVFTPGQQDKCFMCGQMGHLAADCEGKAKRKAGEFDEKGQSASVVKKPYQFLNIWTLREYLEYEMRIPNLPFEIDFEHIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKELRAMGGYLTDSSKPNLSNVEHFIQAVGSYEDKIFQKRARLHQRQAERIKREKAQARRGDDADPQVKPEFLVPVSRYHGSRLASAPTPSPYQQHEIKSKQSGTSGSQGRKVARFSSGATVGAAIVEAENDLETELHDNKDELKAKLKELLREKSDLFNSKNPEEDKVKLGEAGWKERYYEEKFSTKTPEEQEAMRNDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGQLNISFELGSPFKPFNQLLGVFPAASSHALPEEYRKLMTDPNSPIIDFYPTDFEVDMNGKRFAWQGIAKLPFIDEARLLAEVQKIEHTLTEEEFRRNSVMFDMLFVALSHPLSPYIFSLDDRCKKLTDNERTEVKEQLDPRASGGMNGYISLCGGDPCPPIFRSPIASLEDIMDNQVICAIYRLPDAHKHITRPPVGVTFPKKIVSVGDLKPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAERNGFGDQMHAPPPYPAAPYGPPLSSYSDNRYHNQEHHRMALPRPDYSDQTYRRSSNPASVRNHFDHRYDQPHASSATGHHYNRSPVHGYYQPGFHQNDGPGYHPRQEAQTHIPAGAQLPGQGGHNSHHGYQSYGASSYHEWASGWPPEGNNQSNPRGHGHPQGNPRGYGHPQQLGNQYSVLDRRANRGPPPPGYDRR* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1206 1065 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Vvi18g1206 1065 MobiDBLite consensus disorder prediction 455 481 - -
Vvi18g1206 1065 Pfam Xrn1 helical domain 327 818 IPR041412 -
Vvi18g1206 1065 CDD PIN_XRN1-2-like 51 314 - -
Vvi18g1206 1065 ProSiteProfiles Zinc finger CCHC-type profile. 263 277 IPR001878 GO:0003676|GO:0008270
Vvi18g1206 1065 SMART c2hcfinal6 263 279 IPR001878 GO:0003676|GO:0008270
Vvi18g1206 1065 Gene3D - 144 380 - -
Vvi18g1206 1065 Gene3D - 607 708 - -
Vvi18g1206 1065 PANTHER 5'->3' EXORIBONUCLEASE 1 997 IPR027073 -
Vvi18g1206 1065 FunFam 5'-3' exoribonuclease 608 708 - -
Vvi18g1206 1065 MobiDBLite consensus disorder prediction 451 481 - -
Vvi18g1206 1065 Coils Coil 122 142 - -
Vvi18g1206 1065 MobiDBLite consensus disorder prediction 927 941 - -
Vvi18g1206 1065 Coils Coil 498 529 - -
Vvi18g1206 1065 FunFam 5'-3' exoribonuclease 1 136 - -
Vvi18g1206 1065 MobiDBLite consensus disorder prediction 902 975 - -
Vvi18g1206 1065 Pfam Zinc knuckle 263 277 IPR001878 GO:0003676|GO:0008270
Vvi18g1206 1065 SUPERFAMILY Retrovirus zinc finger-like domains 259 284 IPR036875 GO:0003676|GO:0008270
Vvi18g1206 1065 Gene3D - 1 131 - -
Vvi18g1206 1065 FunFam 5'-3' exoribonuclease 149 374 - -
Vvi18g1206 1065 MobiDBLite consensus disorder prediction 1009 1065 - -
Vvi18g1206 1065 MobiDBLite consensus disorder prediction 415 435 - -
Vvi18g1206 1065 Coils Coil 409 429 - -
Vvi18g1206 1065 PIRSF Exonuclease_Xrn2 1 1033 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vvi18g1206 1065 MobiDBLite consensus disorder prediction 415 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1206 Vvi-Chr18 12032189 12068756 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1206 - K12619 vvi:100260845 2149.01