Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1201 ATGAGTTGGCCCTGGAAGAAGAAGTCATCTGACAAGGCGGGAGCCGAGAAAATAGTTGCTGCATTAGAGTCTGCTGGTGTTTCTTTGACTTCAGCTGGATCTCAGGGCAATCAGGAGAATTACAAAAAGCCAACCTATGTTCAAATTTCTGTGGAGTCATATTCGCATTTGACTGGGTTGGAGGATCAAGTGAAGACATATGAGGATCAAGTTCAAAAACTGGAGGATCAAATTACGGAATTGAATGAAAAGCTATCTGAAGCCCATTCTGAGATGACTACTAAGGACAATTTGGTGAAGCAGCATGCTAAAGTTGCTGAAGAAGCTGTCTCAGGTTGGGAGAAGGCTGAAGCAGAAGCTTTGGCATTGAAAAATCATCTGGAATCTGCAACACTTGCAAAGCTTACTGCTGAGGACCGGGCATCGCATTTGGATGGAGCTCTCAAAGAGTGCATGCGGCAGATACGGAACCTCAAGGAAGAACACGAGCAGAATTTGCATGATGTGGTTCTTGCCAAAACCAAGCAGTGGGAGAAAATTAAGCTTGAGCTTGAAGCAAAGATGGGTGACCTAGAGCAAGAACTCCTCAGGTCTGCTGCTGAAAATGCCACACTTTCCAGGACATTACAGGAGCGTTCTAACATGCTATTCAAGATGAGTGAAGAAAAATCACAAGCTGAAGCAGAGATTGAGCTTTTGAAGAGCAATATTGAGTCATGTGAAAGGGAAATCAATTCACTTAAATATGAACTCCATTTAGTTTCCAAAGAGCTGGAAATCCGTAATGAGGAGAAGAACATGAGTATTCGGTCTGCAGAAGTAGCCAACAAGCAGCATTTGGAGGGTGTAAAGAAAATAGCTAAGCTTGAGGCGGAGTGTCAAAGATTACGTGGCCTTGTTCGAAAGAAGTTACCTGGTCCAGCTGCACTGGCCCAAATGAAGCTAGAAGTTGAGAGTTTAGGCCGAGATTATGGAGAAACTAGACAAAGGAGGTCTCCTGTTAAGCCTCCTAGTCCACACCTGTCCCCATTGCCAGAATTTTCTATTGACAACGTCCAGCAATGTCATAAAGACAATGAGTTTCTCACTGAACGATTATTGGGAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCAAAGCGTAATAGTGAATTGCAGGCTTCAAGGAATATTTGCGCCAAGACAGCTAGCAAGCTTCAAAATCTAGAAGCACAGCTGCAAATGAATAATCAACAAAAAAGTCCTCCAAAATCTAATCTACAGATACCCAATGATGGTTCCTTGAGTCAAAATGCAAGCAATCCACCAAGCATGACCTCAATGTCTGAAGATGGAAATGATGATGCAGTTAGTTGTGCGGAATCTTGGGCTACCGGGTTAGTCTCTGGGCTCTCCCAATTCAAGAAGGAAAATGCAAATCACCTCGAGCTTATGGACGACTTTTTGGAGATGGAGAAGTTGGCTTGTTTGTCAAACAATTCTAATGGAGCCTTCTCTGTTAACAATAAGAGATCTGAAGCTGTGGACCATGGTGCCATAGCAGAAGTCACTAGTAGTAAAGATCTTCAGTTGGAACAGAAACATGATTTGGATTCATTGGCCAATCAGGTGTCTTCTAATGCAGAATTGTCAGAAGTAAATCCTCAATCTGATAAGGATCTGCTTCCTTTGACAAAGCTCCGATCAAGAATCTCTATGGTCTTTGAGTCTGTATCAGAGGATTCTGACACAGGGAAAATTTTGGAGGAGATCAAGCGTGTTCTACAGGACACACATGATACCCTGCATCAGCACTCTGTAAGTTGTGTTGTCGAGGAAATACACTGTTCTGATGCTACATGTGATAGGCAGGCTTGTCCTGAGGATGCTGGTGTGACAGCTGAAAGGGAGATCTCTTTGTCCCAAGATTGTAAACCAGGGACTGACACCCTGCATATTATAAGCCAAGAATTGGCAGCTGCCATTTCTCAGATTCATGAATTTGTGCTGTTTCTGGGCAAAGAAGCTATGGCAATCCAGGGCGCATCCCCTGATGGAAATGGATGGAGCCGAAAAATTGAGGACTTCTCTGCCACCGTTAATAAAGTTCTTTGCAGAAAAATGAGTGTGATCGACTTTATTTTTGATCTTTCTAATGTTCTGGCTAAAGCAAGTGAACTCAACTTTAATATTCTGGGGTATAAAGGTGCTGGAGAAGAAATCAATAGTTCAGATTGCATAGACAAGGTTGCTTTACCAGAGAATAAGGTTGTTCAAAAGGACACCTCAGGAGAGAGGTATCCAAATGGTTGTGCCCACATTTCTGATTCCACTTCTGATCCAGAGGTGCCTCATGATGGGAATTTAGTCCCAGGCTTTAAGTCTAATGCTGCATCATGCAACTGCTCATTGGAGGAGTTTGAACAATTGAAATCAGAGAAAGATACCCTGGAAATGCATCTAGCTAGATGTACTGAAAATCTGGAGAGCACAAAATCACAATTACAGGAAACAGAGCAGCTTCTGGCAGAAGCTAAATCACAATTGACATCTGCTCAAAAATTGAACAGCTTGGCTGACACACAGTTGAAATGCATGGCAGAATCATACAGATCACTTGAAACACGTGCGGAGGAGTTGGAAACTGAAGTAAATCTTTTGCGTGGAAAAACTGAGACACTGGAAAGTGAGCTTCAAGAGGAAAAGAGAAGTCATGAGAATGCTTTGATCAGATGCAAGGATCTGCAAGAGCAATTAGAAAGGAATGAGGGTTGTTCTGTATGTGCAATGTCTTCAGCGGCTGATATTGATGTCAAGACCAAACAGGAGAGAGAATTAGCGTCTGCTGCAGACAAGTTGGCAGAATGTCAAGAAACCATATTTCTTCTGGGCAAGCAATTGAATGCCATGCGTCCTCAAACAGATCTCCTGGGATCCCCTCAAAGTGAGAGAAGTCAGAGAGTTGAAGTCTTCCATGAAGATGAACCCACCACTAGTGGCATGAACTTGCAAGACATTGATCAGGTTGACACAGAGAGTACTGCCTCAATCAATGTGCACAGAATAGGTGGTGAGTCCCCCCTGGAGCTATACAACACACCACGCAGCCCATCTGAAACTGAATCAAACCTCCTCTTGAGATCCCCAGTCGGTTCAAAGCATCCAAAGCACAGGCCCACCAAGTCAAATTCTTCCTCTTCTGCCCCGACCCCTGAGAAACAGTCACGGGGTTTCAGCAGATTCTTTTCATCAAAAGGAAAAAATGGCCATTAG 3258 0.434 MSWPWKKKSSDKAGAEKIVAALESAGVSLTSAGSQGNQENYKKPTYVQISVESYSHLTGLEDQVKTYEDQVQKLEDQITELNEKLSEAHSEMTTKDNLVKQHAKVAEEAVSGWEKAEAEALALKNHLESATLAKLTAEDRASHLDGALKECMRQIRNLKEEHEQNLHDVVLAKTKQWEKIKLELEAKMGDLEQELLRSAAENATLSRTLQERSNMLFKMSEEKSQAEAEIELLKSNIESCEREINSLKYELHLVSKELEIRNEEKNMSIRSAEVANKQHLEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDYGETRQRRSPVKPPSPHLSPLPEFSIDNVQQCHKDNEFLTERLLGMEEETKMLKEALAKRNSELQASRNICAKTASKLQNLEAQLQMNNQQKSPPKSNLQIPNDGSLSQNASNPPSMTSMSEDGNDDAVSCAESWATGLVSGLSQFKKENANHLELMDDFLEMEKLACLSNNSNGAFSVNNKRSEAVDHGAIAEVTSSKDLQLEQKHDLDSLANQVSSNAELSEVNPQSDKDLLPLTKLRSRISMVFESVSEDSDTGKILEEIKRVLQDTHDTLHQHSVSCVVEEIHCSDATCDRQACPEDAGVTAEREISLSQDCKPGTDTLHIISQELAAAISQIHEFVLFLGKEAMAIQGASPDGNGWSRKIEDFSATVNKVLCRKMSVIDFIFDLSNVLAKASELNFNILGYKGAGEEINSSDCIDKVALPENKVVQKDTSGERYPNGCAHISDSTSDPEVPHDGNLVPGFKSNAASCNCSLEEFEQLKSEKDTLEMHLARCTENLESTKSQLQETEQLLAEAKSQLTSAQKLNSLADTQLKCMAESYRSLETRAEELETEVNLLRGKTETLESELQEEKRSHENALIRCKDLQEQLERNEGCSVCAMSSAADIDVKTKQERELASAADKLAECQETIFLLGKQLNAMRPQTDLLGSPQSERSQRVEVFHEDEPTTSGMNLQDIDQVDTESTASINVHRIGGESPLELYNTPRSPSETESNLLLRSPVGSKHPKHRPTKSNSSSSAPTPEKQSRGFSRFFSSKGKNGH* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1201 1085 MobiDBLite consensus disorder prediction 1026 1042 - -
Vvi18g1201 1085 Coils Coil 216 257 - -
Vvi18g1201 1085 Coils Coil 802 850 - -
Vvi18g1201 1085 Coils Coil 934 954 - -
Vvi18g1201 1085 MobiDBLite consensus disorder prediction 968 1003 - -
Vvi18g1201 1085 MobiDBLite consensus disorder prediction 410 448 - -
Vvi18g1201 1085 MobiDBLite consensus disorder prediction 1056 1085 - -
Vvi18g1201 1085 Coils Coil 174 201 - -
Vvi18g1201 1085 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 2 1080 - -
Vvi18g1201 1085 Pfam Filament-like plant protein, long coiled-coil 95 970 IPR008587 -
Vvi18g1201 1085 Coils Coil 858 917 - -
Vvi18g1201 1085 MobiDBLite consensus disorder prediction 325 346 - -
Vvi18g1201 1085 MobiDBLite consensus disorder prediction 1021 1085 - -
Vvi18g1201 1085 Coils Coil 387 414 - -
Vvi18g1201 1085 Coils Coil 57 91 - -
Vvi18g1201 1085 Coils Coil 141 168 - -
Vvi18g1201 1085 MobiDBLite consensus disorder prediction 410 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1201 Vvi-Chr18 11974983 11980309 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1201 - - vvi:100262624 2100.09