Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1198 ATGAGAAATGCGGCGAACGTCCGAAGACTGGCCAACCAGTACGCAGCTCAACTGCAACAATGCTGTCCCCACAATCCCATGTCGTATTCTATCGCCCGTACTGTTCATGCCCACATGATAGCTTCTGGGTTCAAGCCACGAGGTTATATCCTCAACCGTCTCATTGATGTCTACTGCAAATCATCTGATCTCGTCTCCGCACACCACCTGTTCGACGAAATTCGTCAACCTGACATCGTCGCTAGAACCACGTTAATTGCCGCCCACTCCTCTGCTGGGAATTCCAATCTAGCACGAGAGATATTTTTTGCGACCCCCTTGGGAATCCGAGACACTGTTTGCTACAATGCTATGATCACGGGCTATTCACATAATAACGATGGTTTTGGAGCCATTGAACTGTTTCGTGACTTGTTGCGGAACGGCTTTAGGCCCGATAATTTCACGTTTACGAGTGTGCTAGGTGCTTTGGCGCTTATAGTTGAAGATGAAAAGCAGTGCCAGCAGATACATTGTGCTGTAGTGAAGTCAGGATCTGGGTTCGTTACTTCGGTTTTAAATGCACTACTATCTGTATTTGTTAAGTGTGCGTCTTCCCCATTAGTGTCATCGTCATCATTGATGGCTGCGGCCAGGAAGTTGTTTGACGAGATGACCGAGAGAGATGAGTTGTCGTGGACAACAATGATAGCCGGATATGTAAGGAATGGTGAACTTGATGCAGCACGTCAGTTTCTTGATGGGATGACAGAAAAATTGGTGGTTGCGTGGAATGCGATGATTTCGGGGTATGTGCATCATGGGTTTTTCCTAGAAGCTCTGGAAATGTTTAGGAAGATGTATTTATTAGGAATTCAGTGGGATGAATTTACATACACAAGTGTACTTAGTGCTTGTGCAAATGCAGGATTTTTTCTGCATGGAAAGCAGGTGCATGCTTACATTCTACGCACTGAACCAAGGCCTTCCCTTGATTTTTCATTGTCTGTAAATAATGCATTGGCAACACTCTATTGGAAATGTGGTAAAGTTGATGAGGCACGGCAGGTTTTTAATCAGATGCCTGTAAAAGACCTTGTTTCATGGAATGCAATCTTATCAGGCTATGTTAATGCAGGGCGGATTGATGAAGCTAAATCATTTTTTGAGGAGATGCCAGAGAGGAATCTTTTGACATGGACTGTGATGATATCTGGATTGGCACAAAATGGTTTTGGTGAAGAAAGTCTGAAGCTATTCAATCGAATGAAGTCAGAGGGCTTTGAGCCATGTGATTATGCATTTGCAGGGGCAATTATTGCTTGTGCTTGGCTTGCAGCATTGATGCATGGACGCCAGCTCCATGCTCAACTTGTCCGGCTAGGTTTTGATTCTAGCCTTTCAGCAGGAAATGCACTGATAACAATGTATGCAAAATGTGGTGTTGTTGAGGCTGCCCACTGTCTTTTCCTAACAATGCCTTATTTGGATTCAGTATCTTGGAATGCCATGATTGCAGCTCTGGGTCAACATGGACATGGTGCTCAAGCACTAGAACTTTTTGAACTGATGTTGAAGGAAGACATATTACCAGATCGGATAACTTTCCTCACAGTTCTTTCCACTTGTAGCCATGCCGGTCTAGTTGAAGAGGGGCATCGCTATTTCAAATCCATGTCAGGCCTTTATGGTATATGCCCAGGTGAAGATCATTATGCTCGTATGATTGATTTGTTGTGTCGAGCTGGGAAGTTCTCAGAAGCAAAGGATATGATTGAAACAATGCCTGTTGAGCCAGGTCCACCTATTTGGGAGGCACTTCTTGCTGGTTGCCGGATTCATGGGAACATGGATTTAGGTATCCAAGCTGCAGAACGACTCTTTGAGCTAATGCCACAGCATGATGGAACCTATGTGCTCTTGTCAAACATGTACGCCACTGTGGGCAGGTGGGATGATGTGGCTAAGGTGCGGAAATTAATGAGGGACAAGGGTGTGAAAAAGGAGCCTGGATGTAGTTGGATTGAGGTTGAAAACAAAGTTCATGTGTTCTTAGTGGATGATATTGTGCACCCTGAGGTGCAAGCAGTATACAATTATCTCGAAGAACTGGGATTAAAAATGAGGAAATTAGGGTATATCCCTGACACAAAGTTTGTATTGCATGATATGGAATCTGAGCAGAAGGAATATGTTTTGTCTACTCACAGTGAAAAGCTTGCTGTTGGTTTTGGGCTCCTGAAGCTCCCTCTTGGAGCCACAGTTAGGGTTTTCAAGAACCTTAGAATTTGTGGGGATTGTCACAATGCATTCAAGTTTATGTCAAAAGTGGTGGAGAGAGAGATTGTTGTGAGAGATGGTAAGAGATTTCATCATTTCAAGAATGGCGAATGCTCTTGTGGCAATTACTGGTAA 2394 0.4407 MRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1198 797 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vvi18g1198 797 FunFam Pentatricopeptide repeat-containing protein 488 697 - -
Vvi18g1198 797 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 388 IPR002885 -
Vvi18g1198 797 Pfam DYW family of nucleic acid deaminases 705 797 IPR032867 GO:0008270
Vvi18g1198 797 Pfam E motif 607 669 IPR046848 -
Vvi18g1198 797 Gene3D Tetratricopeptide repeat domain 108 172 IPR011990 GO:0005515
Vvi18g1198 797 Gene3D Tetratricopeptide repeat domain 2 106 IPR011990 GO:0005515
Vvi18g1198 797 Gene3D Tetratricopeptide repeat domain 324 438 IPR011990 GO:0005515
Vvi18g1198 797 Pfam PPR repeat family 111 158 IPR002885 -
Vvi18g1198 797 Pfam PPR repeat family 490 536 IPR002885 -
Vvi18g1198 797 Pfam PPR repeat family 254 301 IPR002885 -
Vvi18g1198 797 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 388 734 IPR046960 GO:0003723|GO:0009451
Vvi18g1198 797 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Vvi18g1198 797 NCBIfam pentatricopeptide repeat 492 525 IPR002885 -
Vvi18g1198 797 NCBIfam pentatricopeptide repeat 255 288 IPR002885 -
Vvi18g1198 797 NCBIfam pentatricopeptide repeat 113 146 IPR002885 -
Vvi18g1198 797 NCBIfam pentatricopeptide repeat 225 251 IPR002885 -
Vvi18g1198 797 NCBIfam pentatricopeptide repeat 392 423 IPR002885 -
Vvi18g1198 797 NCBIfam pentatricopeptide repeat 360 389 IPR002885 -
Vvi18g1198 797 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Vvi18g1198 797 FunFam Pentatricopeptide repeat-containing protein 317 453 - -
Vvi18g1198 797 FunFam Pentatricopeptide repeat-containing protein 167 316 - -
Vvi18g1198 797 Pfam PPR repeat 360 389 IPR002885 -
Vvi18g1198 797 Pfam PPR repeat 51 75 IPR002885 -
Vvi18g1198 797 Pfam PPR repeat 567 588 IPR002885 -
Vvi18g1198 797 Pfam PPR repeat 332 357 IPR002885 -
Vvi18g1198 797 Pfam PPR repeat 392 421 IPR002885 -
Vvi18g1198 797 Pfam PPR repeat 225 252 IPR002885 -
Vvi18g1198 797 SUPERFAMILY TPR-like 225 629 IPR011990 GO:0005515
Vvi18g1198 797 Gene3D Tetratricopeptide repeat domain 555 735 IPR011990 GO:0005515
Vvi18g1198 797 Gene3D Tetratricopeptide repeat domain 439 554 IPR011990 GO:0005515
Vvi18g1198 797 Gene3D Tetratricopeptide repeat domain 173 323 IPR011990 GO:0005515
Vvi18g1198 797 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Vvi18g1198 797 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1198 Vvi-Chr18 11933806 11936199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1198 14 797 Glycoside Hydrolase AT3G49170 32.071 1.79e-141 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1198 - - vvi:100242103 1605.5