Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1196 ATGGGCTCTGTTTCTCTGAAAATTGGGGATGGCACAGCCAGATTCAGAAGAGCTTCACTGTGTTCTTCAGCGGTGAATGTTCTTATGCTTTTCTCTGTTATCACCACCAATCTTTTCGCTCTCTACGCCTTCACATCGTCTCCAAAGGATCAAGCCCACCCAACTCAGCATACCCACAAGAACATCTCTTTCATTTCCGAGCAAGTCTCGCTGATTATCAGAGAGATCGAGTCTTCGCAAAAGAAACTGGCGCAGATGGAGAAGGAGCTTCTTGGGTACGAGAGCATCGATCTTTCCAGGCCCAATACTGCGAGCGAGCTTAAGCTGTTTCTGCAACGCCATCAGCTTCCTCTCGGGAAAGATTCCAAGACTGGAATCACGGAAATGGTGGCCTCTGTGGGGCATTCCTGTGATAAATCTGTAGATTTGTTGTCTCAGTACATGACTTACAAGGTTTCTGGTGCTTGCCCTGATGATTGGAGCCTTGCCCAGAGGCTGATTTTGCGGGGATGCGAGCCACTGCCACGGAGGAGATGCTTTGCTAAGTCTGTCCCTAAGGTGGGTCTATACTCTTTTCCCATTTCGCTTTGGAAACCGGTTAGTGATAAGATTGTGAGTTGGAGTGGTCTTGGCTGCAAAAATTTTGAGTGCTTGAATAATAAAAAATTAGGGAAAGACTGTGTTGGTTGTTTTGATTTGGCTAATGGGTATGAGAATCAGAGGTTTGTTAAGGCCAGGGGAAAGAACGATTTTCTCATAGATGATGTGTTGGCTCTGGGTAGTGGAGGAACCAGAACAGGCTTTGATATTGGAGGTGGGTCTGGGACCTTCGCTGCTAGAATGGCAGAAAGAAATGTGACGGTGATCACTGCTACTTTAAATGTTGATGCCCCCATTAGCGAATTCGTATCAGCAAGAGGGCTTTTTCCTGTGTATTTGAGTTTAGATCATAGGTTCCCCTTCTATGACAATGTGTTCGATATAGTTCACGCAGCCAGTGGATTAGATGTTGGGGGCCGCCCAGAGAAATTGGAGTTCTTAATGTTTGATATCGATAGGATTTTAAGGGCTGGTGGCTTGTTTTGGTTGGATAACTTCTACTGTGCCAACGAGGAGAAGAAAAAGGCTTTAACGCGGTTGATCGAAAGATTTGGGTACAGAAAACTGAAATGGGTAGTTGGGGAGAAGCCAGATGCAGCTGGGCCAGGAAAATCTGAGGTTTATTTGTCAGGTGTTCTACAGAAGCCTGTAAGAGTATGA 1260 0.4587 MGSVSLKIGDGTARFRRASLCSSAVNVLMLFSVITTNLFALYAFTSSPKDQAHPTQHTHKNISFISEQVSLIIREIESSQKKLAQMEKELLGYESIDLSRPNTASELKLFLQRHQLPLGKDSKTGITEMVASVGHSCDKSVDLLSQYMTYKVSGACPDDWSLAQRLILRGCEPLPRRRCFAKSVPKVGLYSFPISLWKPVSDKIVSWSGLGCKNFECLNNKKLGKDCVGCFDLANGYENQRFVKARGKNDFLIDDVLALGSGGTRTGFDIGGGSGTFAARMAERNVTVITATLNVDAPISEFVSARGLFPVYLSLDHRFPFYDNVFDIVHAASGLDVGGRPEKLEFLMFDIDRILRAGGLFWLDNFYCANEEKKKALTRLIERFGYRKLKWVVGEKPDAAGPGKSEVYLSGVLQKPVRV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1196 419 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 237 388 IPR029063 -
Vvi18g1196 419 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 24 418 - -
Vvi18g1196 419 Coils Coil 69 96 - -
Vvi18g1196 419 Gene3D Vaccinia Virus protein VP39 232 397 IPR029063 -
Vvi18g1196 419 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 261 369 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1196 Vvi-Chr18 11917660 11918919 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1196 - - vvi:100259190 825.469