Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1180 | ATGGCTGCAGCGGTGGAATCGGAGAATAAGGTTGAAGAAAAGAAGTCGGAGAAGGGGGGAGAGCTGTTGTTATGTGGGTCAACGTGTTGGGATGCAATCGGGCGGCGCAAAGGCACTTTGGAGGGCAATTTGGTGTCTCCCACTCGCCTGCGACCGCTCGTTGGCGTCGACATCAGGTTTGTCGCCGCTGGTTGTGCTTCCTGTCATTGTGTGGCATTGGATGTTGAAGGTCGGTGCTATACCTGGGGCCGCAATGAGAGGGGGCAGCTAGGTCATGGTGACAAGCTTCAGCGCGATAGGCCGACTTTTGTATCTGAACTCTCAAAGTATAAAATCATTAGGGCTGGATCTGGAAGGAGCCATTCGGTGGTAGTTTCTGAAGATGGACAATCTCTTGCCTTTGGCTGGAACAAACATGGGCAGCTGGGTTCAGGTTCAGTAAAAAATGAAGTTGAGCTATCACCTGTTCGCTGTCTTGTCTCTGAAGTAAAAACCGTTGCTTGTGGAGCTGAATTTACTGTGTGGTTATCTTCTGCTGAAGGAGCTTCTATACTAACTGCAGGTCTTCCACAGTATGGTCAACTTGGACATGGGACAGACAATGAGTACAATAGTAAAGATAGCTCAGTGAGGCTTGCTTACGAACCGCAACCACGCCCCAAAGCAATAGCTTCTCTTTCTGGGGAAACCATTGTGAAAGTTGCATGTGGAACAAACCATACAGTGGCGGTGGATTCAAGTGGCCATGTTTACACGTGGGGATTTGGTGGCTATGGAAGGCTTGGACATAGAGAGCAGAAGGATGAGTGGGTTCCTCGTCGTGTTGAGGTCTTTCAAAGGCAGAATGTTCTACCTCCTGAAGCAGTGATTTCAGCTGGTTCTGTTAATTCCTCATGTACTGCTGGTGGAGGGCAGTTGTACATGTGGGGCAAAATAAAGATTACAGGTGATGACTGGATGTATCCTAAGCCTCTTATGGATTTAAGTGGTTGGCATCTAAATTGCATGGATTCAGGCAATATGCACCATTTTGTTGGTGCTGATTCCTCCTGCATCAGTTGGGGCCATGCCCAGTATGGAGAATTGGGATATGGCCCTAATGGCCAGAAGTCTTCTGCAGTTCCAAAAAAGGTAGATATCCTTGAGGGCATGCATGTTATCACTGTTGCGTGTGGGTTTGGGAATTCGATGGTGGTTGTTGATAGGACTAATGTTGGTGATCGACTTGATCAGCTTGATATTTATGACGGGAAAGCTGCTGGTGAAGGGAGCGAGGAACCTGAAAGCCTGAATGCAGTTCCTAAGAAAACTACAAAGAAAGGTGCTGCTGCTGCTAAAGCTTCTGAGAACTCCAAGAAGAGGAAGAAGTCAAAAGAATCATCAGACTCTGAAAGCGAGGAGGATTATGAGGATAATGACAGTGATGATAGTGAAGTAGAGGTCAATGGGGAGGCAGAGAAGAAAAGGCAACGGGGTGGAAAGGCTTCTGGCAGAGGCCGGGGCAAAGGTGCTAAGAAACCTGCAACAGGGAAAAAAGACTCTGGGCGCGGGCGAGGCCGCCCTCTTGCTGTTGAGAAAACCTTGCAGCATTCTCAGGGGAAAGGGAAAAGAGGAAGGCCGAGGAAGTGA | 1629 | 0.4856 | MAAAVESENKVEEKKSEKGGELLLCGSTCWDAIGRRKGTLEGNLVSPTRLRPLVGVDIRFVAAGCASCHCVALDVEGRCYTWGRNERGQLGHGDKLQRDRPTFVSELSKYKIIRAGSGRSHSVVVSEDGQSLAFGWNKHGQLGSGSVKNEVELSPVRCLVSEVKTVACGAEFTVWLSSAEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLAYEPQPRPKAIASLSGETIVKVACGTNHTVAVDSSGHVYTWGFGGYGRLGHREQKDEWVPRRVEVFQRQNVLPPEAVISAGSVNSSCTAGGGQLYMWGKIKITGDDWMYPKPLMDLSGWHLNCMDSGNMHHFVGADSSCISWGHAQYGELGYGPNGQKSSAVPKKVDILEGMHVITVACGFGNSMVVVDRTNVGDRLDQLDIYDGKAAGEGSEEPESLNAVPKKTTKKGAAAAKASENSKKRKKSKESSDSESEEDYEDNDSDDSEVEVNGEAEKKRQRGGKASGRGRGKGAKKPATGKKDSGRGRGRPLAVEKTLQHSQGKGKRGRPRK* | 543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1180 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Vvi18g1180 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 78 | 94 | IPR000408 | - | |
| Vvi18g1180 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 234 | 250 | IPR000408 | - | |
| Vvi18g1180 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 250 | 264 | IPR000408 | - | |
| Vvi18g1180 | 542 | PRINTS | Chromosome condensation regulator RCC1 signature | 112 | 125 | IPR000408 | - | |
| Vvi18g1180 | 542 | PANTHER | PROTEIN RCC2 | 8 | 521 | IPR028641 | - | |
| Vvi18g1180 | 542 | MobiDBLite | consensus disorder prediction | 418 | 542 | - | - | |
| Vvi18g1180 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 128 | 174 | IPR000408 | - | |
| Vvi18g1180 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 247 | 285 | IPR000408 | - | |
| Vvi18g1180 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 353 | 398 | IPR000408 | - | |
| Vvi18g1180 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 76 | 125 | IPR000408 | - | |
| Vvi18g1180 | 542 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 185 | 244 | IPR000408 | - | |
| Vvi18g1180 | 542 | MobiDBLite | consensus disorder prediction | 464 | 480 | - | - | |
| Vvi18g1180 | 542 | Gene3D | - | 6 | 214 | IPR009091 | - | |
| Vvi18g1180 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 248 | 303 | IPR000408 | - | |
| Vvi18g1180 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 129 | 179 | IPR000408 | - | |
| Vvi18g1180 | 542 | MobiDBLite | consensus disorder prediction | 506 | 520 | - | - | |
| Vvi18g1180 | 542 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 234 | 244 | IPR000408 | - | |
| Vvi18g1180 | 542 | Gene3D | - | 215 | 406 | IPR009091 | - | |
| Vvi18g1180 | 542 | SUPERFAMILY | RCC1/BLIP-II | 19 | 402 | IPR009091 | - | |
| Vvi18g1180 | 542 | MobiDBLite | consensus disorder prediction | 446 | 463 | - | - | |
| Vvi18g1180 | 542 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 115 | 125 | IPR000408 | - | |
| Vvi18g1180 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 247 | IPR000408 | - | |
| Vvi18g1180 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 402 | IPR000408 | - | |
| Vvi18g1180 | 542 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 77 | 128 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1180 | Vvi-Chr18 | 11750211 | 11760799 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1180 | - | - | vvi:100245560 | 966.452 |