Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1172 ATGGCCACCCCACCAGCCCATATGATTCGTACTTTGATTTTTCCCTTTCTCTGTTGGCAGCTACTCTTTGCGCCCGGACCATGCTGCCGGGTTTTAACCCACGCTGCCGGCGGCGAGTGGCAGCTCTTGCTCAAGAATATTGGCATTACAGCCATGCACATGCAGCTCCTTCACAATGACCGTGTCGTCATCTTTGATCGCACTGATTTTGGGAAATCAAACCTTTCCTTGCCCGATGGGAAATGTCGGAATGATCCAAACGACACCGTATTGCCCATTGACTGCACTGCACACTCTGTTGAATATGACGTCGCAACTAACTCTATACGTGCCCTTATGGTTCAAACCGATGTGTGGTGTTCATCAGGGGCTGTCATGGCTAATGGTAACTTGATCCAAACCGGTGGCTTCAACGACGGTGACCGTGTGGTTCGGATTTTCAAGCCGTGTTCTTCCTGCGACTGGGAAGAAGTTCCATTCGGACTGGCTGCGCGGCGATGGTACGCGACTAATCATATATTACCCGACGACCGGCAAATTGTAATCGGGGGCAGAAGGCAATTCAACTACGAGTTTTATCCCAAGACCGGCGCTGCTAGCAATGCGTACAGTTTACCATTCCTAGCACAAACCAACGACCGCGGTATAGAGAACAATCTCTATCCATTTGTTTATCTTCATACCGATGGAAATTTATTTATTTTTTCTAATAATCGAGCTATCTTGTTCGATTACGCCAAAAATGTCGTGGTGAAGACGTTCCCAACAATTCCCGGAGGCGATCCTCGTTGTTATCCGAGCACTGGGTCTGCAGTCATGCTGCCACTGAACTTACAAGCATCATCCATCGAAGTCGAGGTTCTGGTGTGTGGAGGTGCACCCACTGGATCCTACACCCAAGCCTCAAAGGGTAATTTCGTCGGTGCTCTTAAAACTTGTGCGAGAATCAAAATCACGGACAGTTCGCCGCAGTGGGTCATGGAGACAATGCCTCTGGCTAGGGTCATGGGCGACATGACACTGCTCCCAAACGGCGACGTTTTGATCATCAACGGCGCGTCCGCGGGGACTGCCGGATGGGAGAACGGTCGAGACCCGGTTCTGAAACCGGTTCTTTACAAACCCGATAAACCAACCGGGTCGCGGTTCGAGGTAATGAACCCGACCACCATTCCCCGGATGTACCACTCCACGGCGATTCTTCTCCGGGACGGTCGCGTTCTCGTTGGGGGAAGCAATCCTCACATTTATTACAAATTCACCGGCGTGCTTTATCCCACAGAGCTGCGCTTGGAGGCATTCTCGCCGGAGTATTTAGATTCTGGATTCAAGAATCTGCGGCCAACCATTATATCTCCCACTTCTCAAGCTAAAATCGGATACGGGAAAGACTTAACGGTTCGGTTTTCTGTGACAGGAACATTGGATCCAGATACGGTGTCAGTAACAATGCTGGCACCTTCATTTACCACACACTCATTGTCAATGAACCAGAGACTGCTGGTGCTTGGAAGTGGGAATGTCAAAAATGCGGAGAAATCGACCTTCGCCATTGCCGTTACCACACCGGCTTCGGCCATTCTTGCTCCATCGGGATATTATGTTCTATTTGTGGTTCATCAAGGTATTCCCAGTGAGGGCATTTGGGTCCAAATTCAGTGA 1662 0.5006 MATPPAHMIRTLIFPFLCWQLLFAPGPCCRVLTHAAGGEWQLLLKNIGITAMHMQLLHNDRVVIFDRTDFGKSNLSLPDGKCRNDPNDTVLPIDCTAHSVEYDVATNSIRALMVQTDVWCSSGAVMANGNLIQTGGFNDGDRVVRIFKPCSSCDWEEVPFGLAARRWYATNHILPDDRQIVIGGRRQFNYEFYPKTGAASNAYSLPFLAQTNDRGIENNLYPFVYLHTDGNLFIFSNNRAILFDYAKNVVVKTFPTIPGGDPRCYPSTGSAVMLPLNLQASSIEVEVLVCGGAPTGSYTQASKGNFVGALKTCARIKITDSSPQWVMETMPLARVMGDMTLLPNGDVLIINGASAGTAGWENGRDPVLKPVLYKPDKPTGSRFEVMNPTTIPRMYHSTAILLRDGRVLVGGSNPHIYYKFTGVLYPTELRLEAFSPEYLDSGFKNLRPTIISPTSQAKIGYGKDLTVRFSVTGTLDPDTVSVTMLAPSFTTHSLSMNQRLLVLGSGNVKNAEKSTFAIAVTTPASAILAPSGYYVLFVVHQGIPSEGIWVQIQ* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1172 553 SUPERFAMILY E set domains 443 552 IPR014756 -
Vvi18g1172 553 PANTHER SECRETED PROTEIN-RELATED 34 552 - -
Vvi18g1172 553 CDD E_set_GO_C 442 552 IPR015202 -
Vvi18g1172 553 Pfam Galactose oxidase-like, Early set domain 447 552 IPR015202 -
Vvi18g1172 553 SUPERFAMILY Galactose oxidase, central domain 86 440 IPR011043 -
Vvi18g1172 553 Gene3D - 34 445 IPR037293 -
Vvi18g1172 553 FunFam Aldehyde oxidase GLOX 34 445 - -
Vvi18g1172 553 Pfam Glyoxal oxidase N-terminus 52 292 IPR009880 -
Vvi18g1172 553 Gene3D Immunoglobulins 446 553 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1172 Vvi-Chr18 11698060 11699721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1172 - - vvi:100253967 1134.01