Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1171 ATGAGCAAGAGACCTCCGCCTGATCCCGTGGCGGTGCTGAGGGGTCACCGCGCTTCTGTCACCGACGTCTGCTTTCATCCCTCCAATTCTATACTTTTCACAGGTTCTTCAGATGGGGAGTTGCGGATATGGGATACAGTACAGCACCGGACAGTATCATCCGCCTGGGTGCACAGCGCGGCACACGGCGTTGTCTGTGTTGCCGCTAGTCCTTTAATTGGAGACAACAAACTTGTCAGCCAGGGTAGGGATGGAACCGTTAAGTACTGGGATATCGAGGAGGGAGGTCTGTCAAGGTCTCCTTCTCTTACAATCAAAACAAATGCTTACCACTTTTGCAAGCTTTCCTTAATGAAGAAGCCTTGTGCCTGTGCAAGGCAAGCTGAAGGGCCTAAGCATTATCATGATATGGATGTCAAGGACACAGTTGATGCTGAAATGCTGAATGATAGCAGTGGAAAGGCTCAAGAAAGTCTGACAGAGTGTTCTGATGCTGCACATGCTGAAGGGCCAAAATATGTTGCAATAGCGGGGGAACAGTCTTCTGAGGTTGAGATTTGGGATCTCAATACTGCAGAAAGGATTGCACAATTACCTCAAAAGTGCCTTGGTGGATCCTCAAATTATTGTACAAAATCAAGAGGAATGTGCATGGCTGTTCAGGCATTTTTACCATCTGAATCACAGGGTTTCCTAAACATCTTGAGTGGTTATGAGGATGGAACCATGGTTTGGTGGGATATAAGGAATCCAGGGATTCCTATAACTTCTGTAAAGTTTCATTTGGAGCCAATTTTAAGCATATGCCTTGACGGGTCATGCAGTGGGGGAATCTCTGGAGCTGCAGATAACAAAATTGTGATATTTGGTCTAGATAATCCGATGGGTTCGTGTGTAGTCAAGAAAGAAATTAGTTTGGAGCGGCCTGGCATATCAGGCACCTCAGTTCGATCGGATGGCAAAATTGCTGCAACTGCTGGCTGGGACCATAGAATAAGGATATTTAATTATCGTAAAGGAAGCGCTTTGGCAATATTAAAGTATCATCGTGCCACGTGCAATGCTGTCTCATTCTCACCTGATTGCAAGCTAATGGCCTCCTCCTCAGAAGACTCCACAGTTGCGCTGTGGGAACTTTACCCTCCCTAA 1149 0.4648 MSKRPPPDPVAVLRGHRASVTDVCFHPSNSILFTGSSDGELRIWDTVQHRTVSSAWVHSAAHGVVCVAASPLIGDNKLVSQGRDGTVKYWDIEEGGLSRSPSLTIKTNAYHFCKLSLMKKPCACARQAEGPKHYHDMDVKDTVDAEMLNDSSGKAQESLTECSDAAHAEGPKYVAIAGEQSSEVEIWDLNTAERIAQLPQKCLGGSSNYCTKSRGMCMAVQAFLPSESQGFLNILSGYEDGTMVWWDIRNPGIPITSVKFHLEPILSICLDGSCSGGISGAADNKIVIFGLDNPMGSCVVKKEISLERPGISGTSVRSDGKIAATAGWDHRIRIFNYRKGSALAILKYHRATCNAVSFSPDCKLMASSSEDSTVALWELYPP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1171 382 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Vvi18g1171 382 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Vvi18g1171 382 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vvi18g1171 382 SMART WD40_4 6 45 IPR001680 GO:0005515
Vvi18g1171 382 SMART WD40_4 339 378 IPR001680 GO:0005515
Vvi18g1171 382 SMART WD40_4 206 247 IPR001680 GO:0005515
Vvi18g1171 382 SMART WD40_4 297 336 IPR001680 GO:0005515
Vvi18g1171 382 SMART WD40_4 48 91 IPR001680 GO:0005515
Vvi18g1171 382 SMART WD40_4 251 290 IPR001680 GO:0005515
Vvi18g1171 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 382 IPR001680 GO:0005515
Vvi18g1171 382 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Vvi18g1171 382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 382 - -
Vvi18g1171 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 78 100 IPR001680 GO:0005515
Vvi18g1171 382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Vvi18g1171 382 PANTHER TRANSDUCIN BETA-LIKE 3 4 379 - -
Vvi18g1171 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Vvi18g1171 382 Gene3D - 148 380 IPR015943 GO:0005515
Vvi18g1171 382 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Vvi18g1171 382 Pfam WD domain, G-beta repeat 343 377 IPR001680 GO:0005515
Vvi18g1171 382 Gene3D - 3 127 IPR015943 GO:0005515
Vvi18g1171 382 SUPERFAMILY WD40 repeat-like 4 378 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1171 10 97 Miscellaneous Gene Families AT5G08390 34.831 4.92e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1171 K24770 - vvi:100252237 786.949