Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1170 ATGACCATAAAGGATGGGTTGGCTCCGTGTTTAGCAGATCTTGGTGGCAGTCCTGATTCCCATGTTGAAGCTTTGATGGGTAAGTTGGAGTGCTCTGGTGATTCTTCCCTACAGAACGCCCTAAATCTAGTTCATGGGTATCTGAATCTAATCCCATCATGTGGCTATCGTGAAGTTCTGATCTTATATTCAGCTCTCAGTGCTTGTGACACAGAAGATCTCCATGGCTTCACTCTACACTCGGACGGTATCATTGATGGTGGCGATGAGTGGTATGGGAACACTGAGAGGAAAAAGAAAGCTATGGCTGAACTGGGTCTGTTCTATCTTGGCATGGGAGTTTCAGATGATGAAGAGGGTACTCGCCATAGGCCATCATTGATGTCTGGAGGTTCATCTATGGCCCACAGGACAAGAAGGCTGTTTGCGTCCATACCTTGA 441 0.4694 MTIKDGLAPCLADLGGSPDSHVEALMGKLECSGDSSLQNALNLVHGYLNLIPSCGYREVLILYSALSACDTEDLHGFTLHSDGIIDGGDEWYGNTERKKKAMAELGLFYLGMGVSDDEEGTRHRPSLMSGGSSMAHRTRRLFASIP* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1170 146 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 72 134 IPR036291 -
Vvi18g1170 146 Pfam Ssl1-like 2 75 IPR007198 -
Vvi18g1170 146 Gene3D von Willebrand factor, type A domain 1 80 IPR036465 -
Vvi18g1170 146 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 1 75 - -
Vvi18g1170 146 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 80 136 IPR006115 GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1170 Vvi-Chr18 11652661 11653284 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1170 K03142 - vvi:100253554 127.872