Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1168 ATGGATGATGAGGAGAAGAAGTCCGGTTCTAAACGGAGATTGAAGCATATAGAGATTGGATTTGATTCAGATGATGATGAGCCTATTGGGTCTATATTTAAGTTGAGGAGGCAGACAAACCCTAAGAAGGTAAAGTTGGGATTGGACAGTGGTGGTAAGACTGGGGAGAAGTTGAAGAGTGTTGAAGCTAGGGCAGAGAAATTGGTGGGGGAAGATGAGGAGTTGGGGGGAATGGATGATACATTGGCGAGCTTTAGGAAGAAACTAAGAGGTCCAAAGAAAGATACTGGATCTGGAACAGCAGTGGTTAGGGGATCAAATTTGAATGTGGTGGAACTGAAGGATGTGGAGGAAGGTAGAGGAATTCGCGATTATGGTTCTGATGTGACTATGGACAAAGGGTTAGAAAAGAAGTTGAAAAGAAAATCTAAGAGATCCAAGATTGTTTCCACAAAGAAGAAAACTGGAGATTCAGTGTGTCAAAGGTCAGAGGGTTCATCATTACAGGATCAAAAAGAGATGGGCTTATGGCTTGAGAAAGGTTCAAATCATTCTTCAGATGAAAACTTGGAAGATTCGCTGTCTGCATTTGTTCGAAGGGCACAATCTGGTTTGATTAGGAGATCTCGCACTTCTTGTTCGAAAAAGAAAAGGGGGCCTCAGGGTTTGGAGGATGGATTGAGCCATAGATGTGAAGGTGTATCAGAGGATTCTCACGCTGTGGTTGTAAAGATACCTCGCTCCTCATCTGGTTCAAGGCTGATGCACGAAAATCTGACATCCAAAGATAGTTTGCACCCAGTTTCTGATAGAGGTCTAGTAGATTTGGGTCCTGAAAAAACTAAAACAGTAGAAAATCTGAGGCCCGGTGATGGCTCTGGTGAAGTTTTCAACCACATAAAGAAAATTCTACAATCTGTTGATCCAATTAAAGGGGTTTCTTCTGTTCCAGGGGCTACTGATGACATTTCAAGATCTAGTGATGACAGAGTCGATCAATCTTCTGAATCAATTATGGAGGATACAAATCATATTACTGCACTGCAACAACCTCATTCTCACTTGGTGGCATATTCCAACAGGAGTATAGAACACCAATACAGTGAATCCAATAGATTAACAGAAAGGGTTCAGGAGGAAAACACAGTGGTTCCTTGTGACTCAAACCAATTCTGTGATGGAGATTCTGAAGAGTTCATTCATAAGCAAATGAAAGAAAATTCTTCTGCTTCTATACATAAGACCAAGTTGGACACTCAGAATTTGAAAGATGTGTTGAGGCATTGTTCAATGGGGAAAACAACTGATTTGGTGCATGGTGCCGTTCAAAAGCATGTTGCTGTCGCAAAACAGGGGGGAGAAATCCATGGATCTGATGAAGGTCAATCGAGTGTAGGGTTCAATGATGCATTGACACAACAACATGAAGGTGTTGCGACAATTTACCATTCAAGTGCAGACCAGAAGGCTTGTTCTTCTTTGTCTGAAAAGGGAACTGTGGCCCATTGCTTTGATGATAATCTCTTAAAAAGACCACATGAGACTGTATCTAAGGGGACTCATAAACAGATCCCTGGAAATAGCTTGGAGGTCTCCTTAAAATCCCCATCCTGGAACTCCTTGCCTGGATATGTGAAGATCGAGGAGCCTTCAAAATCTGAAACTGGGCTTGATTTTGATAAATCTTCCCAGAATGCTGAACTTCATTCAGCTTACTCTGTCTTGAATTCAATGAAGATGGGAGGAACTTCCAGTGATAGTGATGGTCCAAATCAGATTCCTTTTACCTCCATTGAGGAGCCTGATTGTGCTTCAGTGGATTTGGAAAAGGAGGAAGATGCCTTAATACCTGATGCAGGGCTATCTTCCATCGCTCCAACCTCAGCTGGAGTTCATGAATCTGGGTTTGCTTCCCAGATGGATTGTCCGGAGAAATCTGTAGAAACCGATCATCTGGATGAGTCTTTCCCCTTAATCCAGAAGTGCGACTCTGATTTTCATCAAAATCAACCTTCTCATGATGCATCAAGGGGGGATCATGTTCCAATTCATGATTATCTTTCTGCCAGTGAAGAGGCCAATGGAGCCTCTTCTCCATCCATAACTCCAGACAAAAATGACGCCTATCCAGAAGATGCTGGATCCATGCCTGATCCTGAAATCCAGGATAATAAGTCATCATCAGCTCAGCGCACGTTGCGCAAGCCTAAGAAGCATAGGCAGAGGGACATGGCTTATGAGGGGGATGCTGATTGGGAGATTCTGATACATGAGCAAAGTTTTCCTCAAAGTCACCTGGTTGAAGATACTGACCAGCCCTTAAGAACAAGAGGGAAGTTTGATTCCTCTCTAAATATGGTTTCAGGGACTGATAATGGTGGGGCAGCAGCAGTATCAGTTGGGCTGAAAGCTCGTGCAGTTGGTCCAGTTGAAAAGATAAAGTTTAAGGAGGTCTTGAAGCGGAAAGGTGGGCTTCAAGAATACTTGGAATGCAGGAATCTTATCTTGGGTCTTTGGGGTAAAGATATGAGCCGCATTTTGCCCCTTGCAGACTGTGGAGTGGCTGATACGCCTTCCAAGGATGAACCACCACGTGCTTCCCTAATAAGGGAGATCTATGTGTTTCTTGATCACAGAGGTTATATAAATGTTGGAATTGCTTCTGAAAAGGAGAAAGCAGATCCTGATTCTAAGCATAATTACAAACTTCTAAAAGAGAAAACCTTTGGGGAAAAGTCTGGAATTGCTATTGCTGATTCAGAGGATGGAGTTTCGTTTATCCTAGGTCAGGGCAGGAGTTCTGAAACTTCCACAGAGGCAAAGAGTGGCCTTGTATTTGATGATGAAAACAAGGCATCAGATGGAGCTGTTGTTGATCTAAGGACATTGGAGCCATCCACTCTGGTTGAACCCAAAGAATGCCTGGCAGATGATTACCAGGAACATGGTTGCATGGATGCAAATGAATTCAACAGAAAAGTCAATTTGGATGTTTCGGAGTCATCATGCAGAATAGATGACAGTGGAACAATTCCTACTATAGCTCCAGAGTTGATGAATGAGTCATGTGGTGTTGAATCTGCCTCAATGGATAGTGCCAAGAGGGATCACAATGTGCAGTTTGATTCAGATGTCAGAAAAAAAATCATTGTTGTTGGAGCTGGTCCTGCTGGCTTAACTGCAGCACGCCACTTGCAACGCCATGGTTTTTCTGTCATTGTGCTTGAGGCTAGGAGTAGAATAGGGGGTCGTGTTTATACAGACCACTCATCTCTTTCAGTTCCTGTGGATCTTGGAGCTAGCATCATTACAGGTGTTGAGGCTGATGTAGATACTGAAAGAAGGCCAGATCCTTCCTCATTAGTTTGTGCTCAGTTGGGACTTGAGTTAACTGTCTTGAACAGTGACTGCCCACTGTATGATATTGTAACAGGTCAGAAAGTCCCTGCGGATTTGGATGAAGCTTTGGAAGCTGAATACAACAGTCTCCTTGATGACATGGTACTCATTGTTGCACAAAAGGGGGAACATGCAATGAAAATGTCTCTCGAGGAGGGTTTAGAATATGCCCTTAAAAGGCGTCGTATGCCTCGATTGGGATCAGATTATACAGAAAATGAACTGCAGAATTTGGATAAGCCTTCCCTTGATTCTGAAAAAATTATTGTTGATAGAAAAATGCTTGAGAGGAATAGTTCTAAAGAGGAGGTTTTGAGTCCTATTGAGAGGAGAGTTATGGATTGGCATTTTGCTCACTTAGAGTATGGTTGTGCTGCGTTGCTCAAAGAAGTATCTCTTCCTTACTGGAATCAGGATGATGTCTATGGGGGGTTTGGAGGTGCTCATTGTATGATTAAAGGTGGTTACAGCTCCGTCATTGAATCTCTAGGAGAAGGGCTTCACATCCTTTTGAACCAGGTGGTTACGGATGTATCATATAGCTCAAAGGACGCTGGAGGGACGGGTAGCCAGTGTAAAAAGGTGAAGGTTTCCACATCAAATGGCAGTGAATTTTCAGGAGATGCAGTCCTGATTACAGTGCCACTTGGATGCTTAAAAGCAGAAGCTATCAAGTTTTTGCCGCCATTACCCCAATGGAAACATTCTTCCATACAGCGCCTTGGCTTTGGAGTGCTCAATAAAGTAGTTCTGGAGTTTCCAGAAGTATTTTGGGATGACTCGGTGGATTACTTTGGAGCTACTTCTGAGCAACGGAACTGGAGGGGGCAGTGTTTTATGTTCTGGAATGTCAAGAAAACAGTTGGGGCTCCTGTTCTTATAGCCTTAGTGGTTGGTAAGGCAGCTATAGATCATCAGGATTTGAGCTCTTCTGATCATGTAAACCATGCCTTGTCGGTCCTCCGTAAACTTTTTGGGGAGACTTCAGTACCTGATCCGGTTGCTTCAGTAGTGACAAACTGGGGGAAGGATCCTTTTAGTTATGGTGCCTACTCTTATGTTGCTGTAGGAGCATCTGGGGAAGACTATGATATATTGGGAAGGCCTGTGGAGAACTGCTTATTTTTTGCTGGTGAAGCTACTTGCAAGGAGCACCCAGACACGGTTGGTGGTGCAATGATGAGTGGGCTACGTGAGGCTGTGCGCATAATTGACATATTGACTACAGGAAATGATTATACAGCAGAAGTAGAAGCAATGGAGGCTGCACAGAGGCATTCAGAAGGAGAAAGGAATGAAGTTAGGGACATACTGAAGAGACTTGAAGCAGTTGAACTCTCAAATGTCCTGTACAAGAGCTCTTTGGATGGGGATCTGATTTTGACCAGAGAAGCTTTACTCCAGGACATGTTTTCAAATGCAAAAACCACAGCTGGACGATTGCATCTGGCCAAAGAGTTGTTGACTTTTCCTGTTGAAGCTCTGAAGTCCTTTGCTGGGACCAAAGAAGGGCTTTGCACACTCAACTCATGGATACTGGATTCAATGGGGAAGGATGGGACTCAACTCTTACGTCATTGCGTTCGTCTTCTTGTGCTTGTTTCAACAGATCTAATTGCAGTCCGCTTGTCAGGTATTGGTAAAACTGTGAAAGAAAAAGTTTGTGTACATACTAGCCGTGACATACGTGCCATAGCAAGCCAGCTGGTAAATGTGTGGATTGAAGTTTTCCGCAAGGAAAAAGCTTCTAATGGTGGACTCAAGTTACTGAAACAAACAACTGCCTCAAACTCTGCAAAGGGCAAATCTTTCAAGGATCTGGCTTCAGGAAAGCCACCTATACGTGTGCATCATGGTGCACTAGATTTTAAAGGAAGTTCACAGGTTTCTGCATCTGCTCGAAGCCATTCTCCTTCCAGTGCAAGTATTAAGAAAGATAATGGGAAGCCAGTCAAGTTGGAAAGCATGACTAACTCCAAACCGGATGGTAATCAATCAAGGTCACCAGGATCGGTAGGCAGAATGGATGTTGAGGGGGAGGAGGGCAATAATTTAATGTCTGAAGAAGAAAAGGTTGCCTTTGCTGCGGCTGAAGCAGCCCGTGCTGCTGCTCTTGCAGCTGCTGAGGCTTATGCATCTGAAGCCAAGAGCAACACATCACTGCAGCTTCCTAAGATACCCTCATTTCACAAATTTGCTAGAAGGGAGCAATATGCACAAATGGATGAGTCTGATCTTAGAAGGAAGTGGTCTGGTGGTGTTTCAGGAAGACAAGATTGTATATCAGAAATAGACTCTAGGAACTGTAGGGTTAGGAATTGGTCTGTTGATTTTCCTGCCGCTTGTGTCAACCTTGAAAGTTCGAGAATGTCAGCTGATAACCACTCGCAACGGAGCCATTCAAATGATATTGCATGCCCGTTGAACTTTAGAGAGCACTCTGGAGAAAGTGCAGCCGTGGACAGTAGTTTATTTACAAAAGCATGGGTTGATTCTGCTGGTAGTGTGGGGATAAAGGACTATCATGCCATAGAAAGATGGCAATCTCAAGCAGCAGCGGCTGATTCTGATTTCTACCAGTCAACTAGGCACATACGGGATGAGGAAGATTCTAACACAATTTCACAACCACCAACCTGGAAGCATGATAGACAGGCAAATGAAAGCTCTGTTTCTCATGTTACAGTAAACAAGGAGTTGGTGAAAAATCAACCTAGAGGAGCAGAGAACATAAAACAGGCTGTGGTGGATTATGTTGGATCATTGCTCATGCCTCTTTATAAAGCAAGAAAAATTGATAAGGAAGGATATAAGTCAATAATGAAGAAAAGTGCAACTAAGGTTATGGAGCAGGCCACAGATGTGGAGAAAACTATGGCTGTTTCTGAGTTTCTTGATTTCAAACGCAGGAATAAGATACGTTCATTTGTGGACAAGTTGATTGAGAGGCACATGGCGATGAACCCAGTTGGAAATCCTTGA 6381 0.4347 MDDEEKKSGSKRRLKHIEIGFDSDDDEPIGSIFKLRRQTNPKKVKLGLDSGGKTGEKLKSVEARAEKLVGEDEELGGMDDTLASFRKKLRGPKKDTGSGTAVVRGSNLNVVELKDVEEGRGIRDYGSDVTMDKGLEKKLKRKSKRSKIVSTKKKTGDSVCQRSEGSSLQDQKEMGLWLEKGSNHSSDENLEDSLSAFVRRAQSGLIRRSRTSCSKKKRGPQGLEDGLSHRCEGVSEDSHAVVVKIPRSSSGSRLMHENLTSKDSLHPVSDRGLVDLGPEKTKTVENLRPGDGSGEVFNHIKKILQSVDPIKGVSSVPGATDDISRSSDDRVDQSSESIMEDTNHITALQQPHSHLVAYSNRSIEHQYSESNRLTERVQEENTVVPCDSNQFCDGDSEEFIHKQMKENSSASIHKTKLDTQNLKDVLRHCSMGKTTDLVHGAVQKHVAVAKQGGEIHGSDEGQSSVGFNDALTQQHEGVATIYHSSADQKACSSLSEKGTVAHCFDDNLLKRPHETVSKGTHKQIPGNSLEVSLKSPSWNSLPGYVKIEEPSKSETGLDFDKSSQNAELHSAYSVLNSMKMGGTSSDSDGPNQIPFTSIEEPDCASVDLEKEEDALIPDAGLSSIAPTSAGVHESGFASQMDCPEKSVETDHLDESFPLIQKCDSDFHQNQPSHDASRGDHVPIHDYLSASEEANGASSPSITPDKNDAYPEDAGSMPDPEIQDNKSSSAQRTLRKPKKHRQRDMAYEGDADWEILIHEQSFPQSHLVEDTDQPLRTRGKFDSSLNMVSGTDNGGAAAVSVGLKARAVGPVEKIKFKEVLKRKGGLQEYLECRNLILGLWGKDMSRILPLADCGVADTPSKDEPPRASLIREIYVFLDHRGYINVGIASEKEKADPDSKHNYKLLKEKTFGEKSGIAIADSEDGVSFILGQGRSSETSTEAKSGLVFDDENKASDGAVVDLRTLEPSTLVEPKECLADDYQEHGCMDANEFNRKVNLDVSESSCRIDDSGTIPTIAPELMNESCGVESASMDSAKRDHNVQFDSDVRKKIIVVGAGPAGLTAARHLQRHGFSVIVLEARSRIGGRVYTDHSSLSVPVDLGASIITGVEADVDTERRPDPSSLVCAQLGLELTVLNSDCPLYDIVTGQKVPADLDEALEAEYNSLLDDMVLIVAQKGEHAMKMSLEEGLEYALKRRRMPRLGSDYTENELQNLDKPSLDSEKIIVDRKMLERNSSKEEVLSPIERRVMDWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSSVIESLGEGLHILLNQVVTDVSYSSKDAGGTGSQCKKVKVSTSNGSEFSGDAVLITVPLGCLKAEAIKFLPPLPQWKHSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATSEQRNWRGQCFMFWNVKKTVGAPVLIALVVGKAAIDHQDLSSSDHVNHALSVLRKLFGETSVPDPVASVVTNWGKDPFSYGAYSYVAVGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILTTGNDYTAEVEAMEAAQRHSEGERNEVRDILKRLEAVELSNVLYKSSLDGDLILTREALLQDMFSNAKTTAGRLHLAKELLTFPVEALKSFAGTKEGLCTLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLIAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVNVWIEVFRKEKASNGGLKLLKQTTASNSAKGKSFKDLASGKPPIRVHHGALDFKGSSQVSASARSHSPSSASIKKDNGKPVKLESMTNSKPDGNQSRSPGSVGRMDVEGEEGNNLMSEEEKVAFAAAEAARAAALAAAEAYASEAKSNTSLQLPKIPSFHKFARREQYAQMDESDLRRKWSGGVSGRQDCISEIDSRNCRVRNWSVDFPAACVNLESSRMSADNHSQRSHSNDIACPLNFREHSGESAAVDSSLFTKAWVDSAGSVGIKDYHAIERWQSQAAAADSDFYQSTRHIRDEEDSNTISQPPTWKHDRQANESSVSHVTVNKELVKNQPRGAENIKQAVVDYVGSLLMPLYKARKIDKEGYKSIMKKSATKVMEQATDVEKTMAVSEFLDFKRRNKIRSFVDKLIERHMAMNPVGNP* 2127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 123 172 - -
Vvi18g1168 2126 PANTHER FLAVIN MONOAMINE OXIDASE 1047 1544 - -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 1758 1777 - -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 1997 2022 - -
Vvi18g1168 2126 Pfam SWIRM domain 804 883 IPR007526 GO:0005515
Vvi18g1168 2126 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1634 1718 IPR035441 -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 1785 1804 - -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 153 170 - -
Vvi18g1168 2126 Pfam Flavin containing amine oxidoreductase 1057 1537 IPR002937 GO:0016491
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 123 137 - -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 2005 2022 - -
Vvi18g1168 2126 Gene3D - 1155 1492 - -
Vvi18g1168 2126 SUPERFAMILY FAD/NAD(P)-binding domain 1046 1540 IPR036188 -
Vvi18g1168 2126 FunFam Lysine-specific histone demethylase 1 homolog 3 1017 1128 - -
Vvi18g1168 2126 SUPERFAMILY Homeodomain-like 795 889 IPR009057 -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 207 237 - -
Vvi18g1168 2126 ProSiteProfiles SWIRM domain profile. 793 893 IPR007526 GO:0005515
Vvi18g1168 2126 Gene3D - 793 897 IPR036388 -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 691 744 - -
Vvi18g1168 2126 SUPERFAMILY FAD-linked reductases, C-terminal domain 1375 1486 - -
Vvi18g1168 2126 Gene3D - 1049 1535 IPR036188 -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 1758 1818 - -
Vvi18g1168 2126 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1168 Vvi-Chr18 11636802 11647357 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Vvi18g1168 Amino_oxidase 2.1e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1168 - - vvi:100255769 4132.41