Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1162 ATGGGTGATATTGGTGGTGAGGAACCAGGGCATTGGAACGCAAAGGGACAAGAGGAGAAGATTTTAGTCTCAGTGAGGTTGAGGCCTTTGGATGTCAAAGAAAATTCAAGGTACCATGTCTCAGATTGGGAATGCATCAATGTGAACACCATTATATACAAGAACAGCCTCAGCTTACCTGAACGATCCCAGTTTCCAACTGCCTATACCTTTGACAGAGTATTTGGACAAAACTGCTCGACAAGGGAAGTGTATGATGAAGGAGCCAAAGAAGTTGCTCTTTCAGTTGTCAATGGTATTAACTCAAGCATTTTTGCATATGGGCAAACAAGTAGCGGAAAAACATACACCATGACTGGAATTACTGAATATGCAGTATCAGATATATATGACTACGTGGAGAGGCATAGAGATAGAGAATTTAAATTGAAGTTCTCTGCCATGGAGATCTACAATGAAGCTCTCAGAGACCTACTCAGCTCAGATAGTGCTCCACTCAGACTTCTAGATGATCCAGAGAGAGGGACTGTTGTTGACAAACTTACGGAGGAGACTCTGAGGGATAGGAACCATCTACAGGAGCTCCTTTCCATATGTGAAGCCCAAAGACAGATAGGGGAGACTGCCCTGAATGAAACAAGCTCCAGATCTCATCAAATTCTCCGATTGACAATTGAAAGTTCTGCTCATAAATTTGTAGGAGCTGAGAACTCAAGCAGTCTTGCAGCTACTGTGAGTTTTGTTGATCTTGCGGGAAGTGAACGTGCTTCTCAGACATTATCAGAGGGTACAAGATTGAAAGAAGGTTGCCACATAAATCGCAGTTTACTAACCCTGGGAACTGTTATTCGCAAATTAAGCAAAGGAAGAAATGTGCACATACCATATAGAGACTCTAAGCTGACACGCATTCTACAGAACTCCTTAGGAGGCAATGCTAGAACTGCCATCATTTGCACTATGAGCCCTGCACGCAGTCATATTGAGCAATCAAGAAACACTCTCTTGTTTGCAAGTTGTGCTAAAGAGGTGTCAACAAATGCGCATGTCAATGTAGTGATGTCAGATAAGATATTGGTAAAGCATTTGCAGAGAGAAATGGCTAGACTGGAGAGTGAGTTGAGAAGTTTAGAATTAAATCATGCTGCCAATGATTCTACCGCACTACTGAAGGAGAAAGAGCTTCTGATTGAAAAGATGGATAAAGAGATAAAGGATTTAACTCAACAACGCGATCTTGCTCACTCTCAAATTGAGGATTTGCTCAAATCAATTGGAGAAGATCAATCAAAACAATCGGTATTTAGAGTTATGGAATCTGATCAGATTTCAGAACACCAAGTGCAAAATACATGGTCAGATGAACCTTCAGCATCAGAATCATCAGATATGCCTAATTCCCATTGCCTGGATTTGGATCTCACAACATGCAGCTCATCTCAGTATTCTGACCACGACAATGGCCTTAATTCCAGAGGGGACAGCCTACAGCTTCCTGAGAATTCTGAAAACCACTTTCCATCTGATGATGCTTCTTCAATACTGTCAACGAATACTCCAATATTTGTTGGGCCCAATCCATGTCAGGGGTGGGAGAAGACCATTCAGGGACTGGATAGGAACACAGAAGATGATACTTCTTTACCTTGTCCAGAAGAGAAAGATGGAAAGTTAGCTTTGACGGTGGCTGGGGATACAGATGCGATATCATCTCATGGTTCTTTGGAGCAAAAAATTCAGGACATGAAAAAGACCATTGAGAGCCTTTTCAGTATGTATCCTCTAGAACCATCTCTTTGTTTCACTGAGGCAGACAAGTCTAGCTCCAGAAGCTTGAGGTTGAATAGAAGCAGAAGTTGTAGATCAGTTATCATGACTATCCAATCTCCATTGTTTGATGAGGCAGAACAGGGTGAGAGCATACTGCCAAATGGTTTAGACGAAGATTTCCCTGGAAGACCAGAAGGCTTCCTGCCAAAGCTTGCTGAAATGGAGTTTGGTGATGGCATGAAAAAATTTTCCAGACAAGATTCTCGAACTTCTGTTAGAAGTGTTTCCATGGATGAAAAAGCACAGAATGTCAAGACATCGGGTGAATGGGATACCAACAGTGCCCACGATTTTGTTGCAAAATTGAATGAAATGGCCGAAGTTCAGTCTGCAATGGAACTTGGTGATGATACGGTTAGAATGCAACTCACTCTCTCTCCCCACTTTTCATTTACATTTGATAGTCTTGGTTCTGGTGCAATCCATTTCTTTTTGGTCAGAATTTCTGTCATGGAGACGACACCAGATGCTGACGACACTGCAGGGAAAAATAAAGTTGACCGGGATACTAAGCAGAATGCTTCTAAATCTTTAAGTTGGGCCTTAGAATTTAAAAGGCAACAGAGAGAGATAATTGCACTTTGGGATTCATGCAATGTACCTTTGGTTCATAGAACCTATTTCTTCCTGCTCTTCAAGGGTAATAAATTGGACTCTGTTTACATGGAGGTAGAGCTAAGAAGGTTGTATTTTCTTAAGGAGTCATTTTCTCATGGAAGTGGAGCTGTGAAAGATGACCAACCTCTCACTCTGGCTTCAAGCAAGAGGGCTCTGAATCGCGAGAGGGAGATGTTGATCAAGCAAGTGCAGAAGCGGTTCTCCCGAAAGGAGATGGAGACGATTTACCAGAAGTGGGGTATCGATTTGGACTCAAAGCAGAGGAAGTTACAATTGGTACGACGTATTTGGAGTGACATCAGAGACATGAACCACATTAGGGAGAGTGCTGCCCTTGTTGCTAAGTTAGTTGGGTTCATAGTGCCAAGTGAGGCGCCCCAGGAGATTTTTGGACTCAGCTTCTCACCTAAACCCATGACCCGGAGGTCCTACAGCTGGAGAAGCAACGTGTCTTCTTTGTCAGGAGTTTGA 2919 0.4265 MGDIGGEEPGHWNAKGQEEKILVSVRLRPLDVKENSRYHVSDWECINVNTIIYKNSLSLPERSQFPTAYTFDRVFGQNCSTREVYDEGAKEVALSVVNGINSSIFAYGQTSSGKTYTMTGITEYAVSDIYDYVERHRDREFKLKFSAMEIYNEALRDLLSSDSAPLRLLDDPERGTVVDKLTEETLRDRNHLQELLSICEAQRQIGETALNETSSRSHQILRLTIESSAHKFVGAENSSSLAATVSFVDLAGSERASQTLSEGTRLKEGCHINRSLLTLGTVIRKLSKGRNVHIPYRDSKLTRILQNSLGGNARTAIICTMSPARSHIEQSRNTLLFASCAKEVSTNAHVNVVMSDKILVKHLQREMARLESELRSLELNHAANDSTALLKEKELLIEKMDKEIKDLTQQRDLAHSQIEDLLKSIGEDQSKQSVFRVMESDQISEHQVQNTWSDEPSASESSDMPNSHCLDLDLTTCSSSQYSDHDNGLNSRGDSLQLPENSENHFPSDDASSILSTNTPIFVGPNPCQGWEKTIQGLDRNTEDDTSLPCPEEKDGKLALTVAGDTDAISSHGSLEQKIQDMKKTIESLFSMYPLEPSLCFTEADKSSSRSLRLNRSRSCRSVIMTIQSPLFDEAEQGESILPNGLDEDFPGRPEGFLPKLAEMEFGDGMKKFSRQDSRTSVRSVSMDEKAQNVKTSGEWDTNSAHDFVAKLNEMAEVQSAMELGDDTVRMQLTLSPHFSFTFDSLGSGAIHFFLVRISVMETTPDADDTAGKNKVDRDTKQNASKSLSWALEFKRQQREIIALWDSCNVPLVHRTYFFLLFKGNKLDSVYMEVELRRLYFLKESFSHGSGAVKDDQPLTLASSKRALNREREMLIKQVQKRFSRKEMETIYQKWGIDLDSKQRKLQLVRRIWSDIRDMNHIRESAALVAKLVGFIVPSEAPQEIFGLSFSPKPMTRRSYSWRSNVSSLSGV* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1162 972 MobiDBLite consensus disorder prediction 685 699 - -
Vvi18g1162 972 Coils Coil 390 424 - -
Vvi18g1162 972 PANTHER CENTROMERE PROTEIN E 18 959 IPR027640 GO:0003777|GO:0007018
Vvi18g1162 972 Coils Coil 353 380 - -
Vvi18g1162 972 PRINTS Kinesin heavy chain signature 208 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1162 972 PRINTS Kinesin heavy chain signature 294 315 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1162 972 PRINTS Kinesin heavy chain signature 244 262 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1162 972 PRINTS Kinesin heavy chain signature 99 120 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1162 972 Pfam Kinesin motor domain 26 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1162 972 MobiDBLite consensus disorder prediction 480 519 - -
Vvi18g1162 972 MobiDBLite consensus disorder prediction 442 467 - -
Vvi18g1162 972 ProSitePatterns Kinesin motor domain signature. 243 254 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi18g1162 972 Gene3D Kinesin motor domain 11 375 IPR036961 -
Vvi18g1162 972 Pfam Domain of unknown function (DUF3490) 793 952 IPR021881 -
Vvi18g1162 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 378 IPR027417 -
Vvi18g1162 972 ProSiteProfiles Kinesin motor domain profile. 20 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1162 972 SMART kinesin_4 18 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1162 972 CDD KISc_CENP_E 20 344 - -
Vvi18g1162 972 MobiDBLite consensus disorder prediction 677 699 - -
Vvi18g1162 972 FunFam Kinesin-like protein 14 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1162 Vvi-Chr18 11600579 11607671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1162 21 377 Miscellaneous Gene Families AT2G21380 42.033 4.68e-77 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1162 K11498 - vvi:100257491 1795.4