Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1161 ATGGCAACGAGGGGAAGCAGATCAGAGAAGGTGAAGAGGATATTTCAGCAATTCGATGGCAACTGTGATGGGGGTCTCAATAGAGATGAAATGGCGGATTTGGTGGTGGCAGTGAACCCTAGGGTTAAGTTCAGCGATGCCCAAATCAGTGCGATTCTGGATGAGGTTTTCCGTACATACGGTGAGTTCATCGACGGCGAGAAGGGGCTCACCTACGACGGCTTATTGAGGACTTACGATGACGGGGCTGGGGACGTCGACCGCGATTTCGACGCGCTTGGGCTGGAGCTGAATTCGGATGACAACAAGGGGAAGTCGGCGGCATCTTCGTCGTCGATTGCGGACGAGAGGGTGTTGGAGCCGCACAAGAAGCAGAGGACGGCAGCGTGGGCGGCGTCGCCGAACCACGGCATTGTGTTCGACGAGACGTGGAAAGTGGTGGACGATTTGGAGATATTGATCAAGAGGTTGAAGGCAAAGCAGGTGAAGGATGGGAAAATGAAAGGTGATAATTTTGATGCATATTCAGATCCGGGATGGTCGAGAGAGTTGGGACCGTCCGCAGAGATGTCAGAGAAAAGGGTGGTTTGGGAAGAGTCTGGGCATGATTATGCTCTGTTTGTGAAGGAATTGGGGGTTTTGAGGACTAAGGCTGATGGGGCAAGGTCAAGAGAGGAAGCATTTGATGGGCATATGGCAATAGGAAGGGTTTTGTATGAGCATCAGTTGTTTAAGGAAGCATTGGTGAGTTTTAAGAGGGCTTGTGAGTTGCAACCTGTAGATGTAAGGTCACATTTTAGAGCTGGGAATTGTTTGTATGTTCTTGGGAGACATGGGGAGGCAAAGGAGGAGTTCACATTGGCGCTTGAGGCTGCTGAGAATGGGGGGAATCAGTCGGCTTATTTGCTTCCGCAGATTCATGTGAATCTCGGGATTGCGCTTGAAGGTGAAGGGATGGTTATGAGTGCTTGTGAGCATTATAGAGAAGCTGCAATTCTTTGTCCAACTCATTTTAGGGCTTTGAAACTCTTGGGTAGTGCTCTGTTTGGTGTAGGTGAATATAGGGCAGCGGTTAAGGCATTAGAAGAGGCTATTTTTATGAAAGCAGATTATGCAGATGCGCATTGTGACTTGGCTTCAGCTTTGCATGCTATGGGTGAGGGTGAGAAGGCAATTCCAGTGTTTCAAAAGGCTATTGATTTGAAACCTGGTCATGTGGATGCTTTGTACAATTTGGGCGGGCTTTATATGGACATGGGTAGGTTTCAGAGAGCTTCAGAGATGTATACCAGGGTTTTAGCTGTTTGTCCAAACCATTGGAGGGCCCAGCTAAACAAGGCTGTTTCCCTGTTGGGGGCCGGTGAAGCAGAGGAAGCCAAGAAAGCTTTGAAAGAAGCATTAAAAATGACAAACAGGGTAGAATTGCATGATGCGATATCTCACTTGAAGCAGCTGCAGAAGAAGAAGGTGAAGCCTAATGGGAGTGCCAATGGGGAGGGGGCTTTTTCTATTGTGGAACCCTCAAAATTTAAGATAGTGGGTGAGAAGACTGCGTTGAGGCCAGAATTGGCCAATACTCTTGAAATTAGGGCTTTTCAAAGGATCACCAGGTTGAGAGGTTGTGATGTGGATCTTCTGAAGAAGGAAATGACTGAAAATGATGTGCCAGTGTCCTATTCTGGTGGTGGTGTACCTGAGAAATCCATACGCAAGCCCAATTTGGAGGTGATTCTCCGCAGGTTACTCCAGTTTTTGAAGCCTGAAACATTTCAAGGAGCTGTTAAAGCTATAAACGAGAGGATCCTTTCTGTTTTGGATGAAACTGGCTCTGGGAGGGTGGATTTGGGCATGTTTTTTTCTGTTCTTGCACCCATTTGTGGTGGTTCACCAGACAAGCGAAAACGGGTGGCCTATGATGCACTTTTGTGGCGACCTGTGAATGAAGGTAGTGCTCAAATAAGAAAGGCTGATGCTCTTAAATATATCAAACTGTTGAGGGCCATATACATTCCTTCTCATGGGGTTAGTGAAATGCTAGAAGTACATGGAGAAGCAGATGTTTCAATGGTGTCCTTGTCCGAGTTTCTTTTGATGTTTGATGATCCTGATTGGGGTTTCGGTATCATGTCCAGTCTGGTGAAGCTTGAAACTGGGGATAGGACTCGCCATGGTCGCTATGCTTGCTCAGTTTGCCGCTACCCCATTATCGGGTCCCGCTTCAAGGAGATGAAATCACATTTTAGTCTGTGCAATCAATGCTACAGTGAAGGAAAGGTGCCTTCTACTTTCAAGCAAGAAGAGTATAGATTCAAAGAGTATGGTAGCGAGTCTGAAGCTATGAAAGATAAGTGCCTGTGCTTTAATTTGCAATCTAAGAGCTCCTCTTATAATGATCCATAG 2400 0.4688 MATRGSRSEKVKRIFQQFDGNCDGGLNRDEMADLVVAVNPRVKFSDAQISAILDEVFRTYGEFIDGEKGLTYDGLLRTYDDGAGDVDRDFDALGLELNSDDNKGKSAASSSSIADERVLEPHKKQRTAAWAASPNHGIVFDETWKVVDDLEILIKRLKAKQVKDGKMKGDNFDAYSDPGWSRELGPSAEMSEKRVVWEESGHDYALFVKELGVLRTKADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPVDVRSHFRAGNCLYVLGRHGEAKEEFTLALEAAENGGNQSAYLLPQIHVNLGIALEGEGMVMSACEHYREAAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFMKADYADAHCDLASALHAMGEGEKAIPVFQKAIDLKPGHVDALYNLGGLYMDMGRFQRASEMYTRVLAVCPNHWRAQLNKAVSLLGAGEAEEAKKALKEALKMTNRVELHDAISHLKQLQKKKVKPNGSANGEGAFSIVEPSKFKIVGEKTALRPELANTLEIRAFQRITRLRGCDVDLLKKEMTENDVPVSYSGGGVPEKSIRKPNLEVILRRLLQFLKPETFQGAVKAINERILSVLDETGSGRVDLGMFFSVLAPICGGSPDKRKRVAYDALLWRPVNEGSAQIRKADALKYIKLLRAIYIPSHGVSEMLEVHGEADVSMVSLSEFLLMFDDPDWGFGIMSSLVKLETGDRTRHGRYACSVCRYPIIGSRFKEMKSHFSLCNQCYSEGKVPSTFKQEEYRFKEYGSESEAMKDKCLCFNLQSKSSSYNDP* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1161 799 FunFam Putative tpr repeat-containing protein 301 391 - -
Vvi18g1161 799 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
Vvi18g1161 799 FunFam Putative TPR repeat-containing protein 221 300 - -
Vvi18g1161 799 ProSiteProfiles TPR repeat profile. 372 405 IPR019734 GO:0005515
Vvi18g1161 799 Gene3D - 1 81 - -
Vvi18g1161 799 Pfam Tetratricopeptide repeat 372 437 - -
Vvi18g1161 799 Gene3D Tetratricopeptide repeat domain 221 302 IPR011990 GO:0005515
Vvi18g1161 799 Coils Coil 453 473 - -
Vvi18g1161 799 SUPERFAMILY EF-hand 4 77 IPR011992 -
Vvi18g1161 799 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Vvi18g1161 799 SUPERFAMILY TPR-like 228 473 IPR011990 GO:0005515
Vvi18g1161 799 FunFam uncharacterized TPR repeat-containing protein At1g05150-like 1 81 - -
Vvi18g1161 799 SMART tpr_5 228 261 IPR019734 GO:0005515
Vvi18g1161 799 SMART tpr_5 338 371 IPR019734 GO:0005515
Vvi18g1161 799 SMART tpr_5 406 439 IPR019734 GO:0005515
Vvi18g1161 799 SMART tpr_5 304 337 IPR019734 GO:0005515
Vvi18g1161 799 SMART tpr_5 372 405 IPR019734 GO:0005515
Vvi18g1161 799 SMART tpr_5 440 473 IPR019734 GO:0005515
Vvi18g1161 799 SMART tpr_5 262 295 IPR019734 GO:0005515
Vvi18g1161 799 FunFam Putative TPR repeat-containing protein 393 493 - -
Vvi18g1161 799 ProSiteProfiles TPR repeat region circular profile. 406 439 - -
Vvi18g1161 799 ProSiteProfiles TPR repeat profile. 406 439 IPR019734 GO:0005515
Vvi18g1161 799 Gene3D Tetratricopeptide repeat domain 303 493 IPR011990 GO:0005515
Vvi18g1161 799 PANTHER EF HAND FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 794 - -
Vvi18g1161 799 Pfam Tetratricopeptide repeat 233 293 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1161 1 791 EF-hand Containing Proteins AT1G05150 79.650 0.0 1322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1161 - - vvi:100252359 1553.11