Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1159 ATGAGTTCACGTAGCACCAGCAGGAGCAGGAGTCAGAGTCGGAGCCGGAGCAGGAGTCCACGAGATCGCAGGATCCGATCTCAACGCTTGTCCTATCGTGATGCTCCTTATAGGAGAGAGTCACGTAGGGGTTTCAGCCAAGGCAATCTGTGCAACAACTGCAAGCGGCCAGGTCACTTTGCAAGAGAATGCCCTAATGTGGCTATTTGTAACAACTGTAACCTTCCTGGGCACATTGCATCAGAGTGCACCACACAATCATTATGTTGGAATTGTCGAGAACCAGGTCACATGGCCAGCAACTGTCCCAATGAGGGAATCTGCCATTCGTGCAATAAGACTGGTCATCGTGCCAGAGACTGCCCAACTCCTGGGTTGCCATCTGGGGACTTGAGGTTGTGCAATAACTGCTACAAGCAAGGTCATATTGCAGCTGACTGTACAAATGATAAGGCATGCAAGAACTGCAGGAAGACTGGCCACATAGCACGTGACTGTCAGAATGAACCAGTTTGCAACTTGTGCAACATAGCTGGGCATGTGGCTAGGCAATGCCCAAAGGCCGAGATTTTTGGAGAGAGGGGTGGTGGGGGTCGCAACACTGGTTTTCGAGATGTTATCTGCAGGAGCTGCAACCAGGTGGGTCATATGAGCAGGGATTGCATGGTTTCCTTGGTCATATGTAATAACTGCGGTGGTAGGGGCCATATGGCATTTGAATGCCCATCGGGAAGATTTATGGACCTTGTAATTTGCATGAGTTCATTGAATCAAAGTCCTACTGGACCCTTCTTTGTGGGAGTCCCTTCGATCAGGTAG 819 0.5006 MSSRSTSRSRSQSRSRSRSPRDRRIRSQRLSYRDAPYRRESRRGFSQGNLCNNCKRPGHFARECPNVAICNNCNLPGHIASECTTQSLCWNCREPGHMASNCPNEGICHSCNKTGHRARDCPTPGLPSGDLRLCNNCYKQGHIAADCTNDKACKNCRKTGHIARDCQNEPVCNLCNIAGHVARQCPKAEIFGERGGGGRNTGFRDVICRSCNQVGHMSRDCMVSLVICNNCGGRGHMAFECPSGRFMDLVICMSSLNQSPTGPFFVGVPSIR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 108 122 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Gene3D - 203 245 - -
Vvi18g1159 272 SUPERFAMILY Retrovirus zinc finger-like domains 198 245 IPR036875 GO:0003676|GO:0008270
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 51 66 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Gene3D - 68 105 - -
Vvi18g1159 272 MobiDBLite consensus disorder prediction 24 39 - -
Vvi18g1159 272 Gene3D - 38 67 - -
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 172 187 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 MobiDBLite consensus disorder prediction 1 39 - -
Vvi18g1159 272 SUPERFAMILY Retrovirus zinc finger-like domains 87 124 IPR036875 GO:0003676|GO:0008270
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 70 83 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 50 66 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 227 243 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 SUPERFAMILY Retrovirus zinc finger-like domains 42 86 IPR036875 GO:0003676|GO:0008270
Vvi18g1159 272 Gene3D - 106 150 - -
Vvi18g1159 272 SUPERFAMILY Retrovirus zinc finger-like domains 130 169 IPR036875 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 133 149 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 171 187 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 207 221 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 50 66 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 107 122 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 70 84 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 227 243 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Pfam Zinc knuckle 152 167 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 153 168 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 208 221 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 134 149 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 PANTHER - 4 248 - -
Vvi18g1159 272 ProSiteProfiles Zinc finger CCHC-type profile. 228 243 IPR001878 GO:0003676|GO:0008270
Vvi18g1159 272 Gene3D - 151 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1159 Vvi-Chr18 11561350 11564736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1159 K09250 - vvi:100241979 490.73