Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1157 ATGGAAGCAATCAGGAAGCAAGCCACAAAGATTATAGACCAGGTCGCAAAGCAACAGCAGGCTGTTCTCAAGCAGTTTTCTGGTGGTGGTTATGGTGGCCCAGATAATGTCCTCACTGATGAGTCAGAACTTCAGCAACATCAAAAACTTGAGAAACTTTACATATCAACCCGTGCTGGGAAGCATTTCCAAAGGGATATTGTCCGTGGTGTGGAAGGTTTCATAGTTACTGGGTCCAAGCAAGTTGAAATAGGTACCAAGTTGTCAGAAGACAGCAGAAAATATGGTGTTGAAAACACTTGTACCAGTGGCAGTACCTTATCTAAAGCTGCATTAAGCTTTGCTAGAGCTCGTGCTCAAATGGAAAAGGAGCGTGGAAATCTACTGAAAGCTCTTGGCACCAAGGTTGGAGAACCCTTAAGAGCAATGGTAATGGGAGCTCCCTTGGAGGATGCTCGACATCTTGCTCAACGATATGAGAGAATGCGAATGGAAGCTGAAGCTCAGGCTATAGAAGTTTCCAAACGTCAAATTAAGGCGAGGGAATCCATGGGCAATCCTGATAATGTTTTGAAGCTGGAGGCTGCTGAAGCCAAGCTTCATGAGCTGAAGTCAAACACAGCAATATTAGGTAAAGAAGCGGTCTCCGCAATGGCAGCTGTAGAAGGCCAACAACAAAGGTTGACTCTTCAGCGAATTATTGCCATGGTTGAATCAGAGCGCAGTTATCATCAAAGTGTCCTGCAGATACTTGATCAGCTAGAAAGTGAGATGCTGGCAGAGCGTCAACGAATTGAAGCTTTTCCTAGTCCAACTGCAAATAATGCCATGCCTCCTCCCCCATCATATGATGAAGTGAACAATGTCTTTGCTTCTCAAACATACGGTGAATCAACTGGCAGCATGGGCTATTTCTTAGGAGAAGTCATGCATTCATTTCAAGCTGAATCTGATGTGGAGTTGAATTTGTCAGTTGGTGATCATGTTGTGATCCGAAAGGTGTCAAACAGTGGCTGGGCAGAAGGTGAATGCAGAGGAAAAGCAGGTTGGTTCCCAGTTGGATACATAGAAAGACGAGAACGCGTTCTTGCAAGCAAGTTGGTGTGA 1107 0.4499 MEAIRKQATKIIDQVAKQQQAVLKQFSGGGYGGPDNVLTDESELQQHQKLEKLYISTRAGKHFQRDIVRGVEGFIVTGSKQVEIGTKLSEDSRKYGVENTCTSGSTLSKAALSFARARAQMEKERGNLLKALGTKVGEPLRAMVMGAPLEDARHLAQRYERMRMEAEAQAIEVSKRQIKARESMGNPDNVLKLEAAEAKLHELKSNTAILGKEAVSAMAAVEGQQQRLTLQRIIAMVESERSYHQSVLQILDQLESEMLAERQRIEAFPSPTANNAMPPPPSYDEVNNVFASQTYGESTGSMGYFLGEVMHSFQAESDVELNLSVGDHVVIRKVSNSGWAEGECRGKAGWFPVGYIERRERVLASKLV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1157 368 Gene3D SH3 Domains 294 366 - -
Vvi18g1157 368 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Vvi18g1157 368 SUPERFAMILY SH3-domain 300 361 IPR036028 GO:0005515
Vvi18g1157 368 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Vvi18g1157 368 Gene3D Arfaptin homology (AH) domain/BAR domain 45 268 IPR027267 -
Vvi18g1157 368 PANTHER SH3 DOMAIN-CONTAINING 16 359 - -
Vvi18g1157 368 Coils Coil 193 213 - -
Vvi18g1157 368 Coils Coil 149 176 - -
Vvi18g1157 368 SMART SH3_2 305 360 IPR001452 GO:0005515
Vvi18g1157 368 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1157 Vvi-Chr18 11552323 11558341 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1157 - - vvi:100264255 707.597