Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1155 ATGAGGCGAGAAGTAGGTAGCCTGGGGTTCTGTTTATCTTGTCTACTTGCGGTGATTACGGTTTCGGAAGTGGTGATTACAGGAGATTCAAGAACCCATTCAGGAGACATTCAAATTCTCAAAGATTTTAAAAATGGGCTCAACCCTGGTTCCATCACCCCCGGCTCTTGCTTGAGCTCCTGGGACTTCTCTGTGGATCCATGCGATTACTTATTCAGCGACCGCTTCACTTGTGGCTTCAGGTGCGACCGCCTCGTCGCCGGCGCCAGCCGGGTTACCGAGATCACCCTTGACCAGGCTGGTTACACCGGCACACTCTCTTCCTCCACCTGGAACCTCCCTTTTCTGCAATTTCTCGACCTCTCTGATAACTCCTTCTCCGGCTCCATACCCGACTCCTTCTCCAACCTCACTCGTCTCCGCCGCCTCACTCTCTCTCGAAACTCCTTCTCCGGGGAGATACCCAACTCCCTCGGCTCTCTCCCTAACCTCGAGGAACTCTATCTCGATAACAACCATCTCCAAGGTCCCATTCCAGCCAGCATTAACGGTCTGATAAGCTTGAAAAAGTTAGAACTTCAAGAAAACGCCCTGTCGGGCGCGTTTCCAGATCTGGGTTCTCTTAAAAACCTCTATTTTTTGGACGCCAGCGATAACCAAATCTGCGGCCAAATCACAACTGCTTTACCGGCGTCCCTATTGGAGCTCTCTATCCGAAACAACAACTTGGAAGGAAACCTACCACATAGATTAGGGAGCTTGAAGTATCTGCAGGTAATGGATCTGAGCGACAACAAACTCTCCGGGGTGATATCATGGATCGTGTTCGACCACCCATCACTGCAACAGCTCACACTCTCTCACAACAACTTCTCCTTGTTGCAAGTGCCGAGCAACATGGGTGAGGGTAGTAAATTGATAGCTCTTGATCTGAGCTACAACCAACTTGGAGGACTGTTGCCGGCGTTCATAGCGTCGATGCCGAACCTGTCGGCAGTGTCATTGGAGCACAACAAGTTCACAGGGATGATACCGTCTCAGTATGCATTGAAGACAGTGGTTGGTGGTGGGGGTGGAACGGCGTCGTTTGAGAGGCTGTTGCTGGGTGGTAACTACTTATTCGGGCCGATACCCGGTCCACTAATGTTTCTGAAACCCGGTTATGCTAACGTGAGCCTGGTGGACAATTGTTTGTATCGGTGCCCTAATAGTTTCTTCTTTTGTCAAGGTGGGACTCAGAAGTCCCTGGTTGATTGTAAGAATTTTAGGCACTCAATCCCATAG 1284 0.5039 MRREVGSLGFCLSCLLAVITVSEVVITGDSRTHSGDIQILKDFKNGLNPGSITPGSCLSSWDFSVDPCDYLFSDRFTCGFRCDRLVAGASRVTEITLDQAGYTGTLSSSTWNLPFLQFLDLSDNSFSGSIPDSFSNLTRLRRLTLSRNSFSGEIPNSLGSLPNLEELYLDNNHLQGPIPASINGLISLKKLELQENALSGAFPDLGSLKNLYFLDASDNQICGQITTALPASLLELSIRNNNLEGNLPHRLGSLKYLQVMDLSDNKLSGVISWIVFDHPSLQQLTLSHNNFSLLQVPSNMGEGSKLIALDLSYNQLGGLLPAFIASMPNLSAVSLEHNKFTGMIPSQYALKTVVGGGGGTASFERLLLGGNYLFGPIPGPLMFLKPGYANVSLVDNCLYRCPNSFFFCQGGTQKSLVDCKNFRHSIP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1155 427 SMART LRR_typ_2 137 160 IPR003591 -
Vvi18g1155 427 SMART LRR_typ_2 208 236 IPR003591 -
Vvi18g1155 427 SMART LRR_typ_2 279 303 IPR003591 -
Vvi18g1155 427 SMART LRR_typ_2 113 136 IPR003591 -
Vvi18g1155 427 SMART LRR_typ_2 161 185 IPR003591 -
Vvi18g1155 427 SUPERFAMILY L domain-like 74 351 - -
Vvi18g1155 427 Gene3D Ribonuclease Inhibitor 296 422 IPR032675 -
Vvi18g1155 427 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 112 178 - -
Vvi18g1155 427 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
Vvi18g1155 427 Gene3D Ribonuclease Inhibitor 204 295 IPR032675 -
Vvi18g1155 427 Gene3D Ribonuclease Inhibitor 34 203 IPR032675 -
Vvi18g1155 427 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Vvi18g1155 427 Pfam Leucine rich repeat 233 291 IPR001611 GO:0005515
Vvi18g1155 427 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 420 - -
Vvi18g1155 427 PRINTS Leucine-rich repeat signature 116 129 - -
Vvi18g1155 427 PRINTS Leucine-rich repeat signature 254 267 - -
Vvi18g1155 427 FunFam Leucine-rich repeat receptor protein kinase EMS1 179 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1155 Vvi-Chr18 11539928 11541211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1155 114 426 Receptor kinase-like Gene Family AT3G11080 28.614 3.04e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1155 - - vvi:100259205 847.04