Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1154 ATGGATTGTGCTGGTGCTTTTCAAGGTTGCAAAGGTTTCACGGAAAACACGGCCATTTCAACATACTTTTTCCTGTTCAACGCTGGTGCATCCTTGGAATCACTTGCTAAAGGTGCAGTGCAATTTTCTCGACGATTTACAGTTCGGGAACTGCAAGATCGGTGGCATTCTCTCCTCTATGACCCTGTTCTTTCTGGAGAAGCTTCTGCTCGCATGATTGAATTTGAACGTTCTGCTTCAACTCTTCCATCAAAATTTAATAGATTTGGAAATTCAAAAGAAAACAAATGTGTTCCTGGGAAGAGAAAAGCTGAAACTATCCGTAGTTGCTACTATGCCTTGCGTAAAAGGATCTGCAACGAGCCTTTTAACTCTATGGATCTAAGTTTTCTGGTTGCACCCAGTAACAGTAATTGTGTTGGAAATGGAGATGAGCCTGTATCTCCAAATTACATGCTCGAAGATCCAATATCAAATCATTTCAGAACTCAGGAACCAAGCTTGGATATCATGCATTGTGCTTTTCCTCAAATGGTGACAGATAATGCTGCTGCCAGTGGTGCTGGAACCAGTGCCCATGGATTTCATGCAGCAGTCCAGAATCCAGTAAAAGAAGATCTTCCTATTGAGCAGAACTCTATACATAAAGAGATTCCTCAAATTCTTGGAGAAAACTTGCCTCATACTGGGAATTGCTCTGGGATTGATGAATTAGGTGAACCAAAAGAATTGCTTGCCTGCAACCTGTTTGAAGCTGATGATTTAGAGGCAAAACCTCCCTCTACTTTTGATCTAATTAATAGTGATCTTGGCAATGTGTGCTCTGAATTTGGAGGAAACCAGGCCTTCGACTTGCCAGGTTCAGATTGTGGTGCTTCATTTGACAATTTAGGGTATTCATCTCCACTTCCTGGGATGCCAATCTGGGACACGGTTGAGGGTATTTCAGCCCCGGATCTTCCAGTTGATACAAGCCTTGGAAAAAAAGATCACCATACAGAAGATACATTTGCACTTCCTAATGATGGTCATGCTAAGATCAATAGTGTATCCGGATATGATGTTGTGCCCTCAGAAACCAAGTTAAAAAACTCAATGCCATGTGACCAATTGAACAATTCTAGCCCAGACGGTTATTTAGCGGAACTATCCAATTCTCTTTTGGACTTTCCCAATGATGAACTCCTTTTCATGGATGTTGATGGAAAAGATATAATTGATAAATCTTACTATGATGGTTTGAACTCACTTTTGTTGAGTTCTCCTACTGACAGTAATCAAGATCATGTGCCTGATATAACCGAACCTGAAGCATCAGTAGGTCCAGATGCATATCTAGTGATTCCTCAGGGTGCCTGCGCTGGGGAACTAGATAACAATGGGAGCATCCATTGTGGTGATGGACATGCTGACTGCAATCCAGAGGCACCAATGCTATCAACTGCAGTGGATTTAAACCCTCAATTTCCTGAGATGTGTAATGGAGTTATTTGCTGCGCATTAAACACTGAGGACCCAGATATTCCATGCAATGATGATGTTTTTCTGCCTAATCAGATTCCCTTATCACCTCTTTCATCTGCAGCCCAACTAAGTTTTCATGAAGCTAATAACCCAACTTCTTCAGCTGTTAAGGATTTCACAGATAATCAAAAGAGTAGTGAAAGATGCCCAAGCCTGCTTAAGAGAGAACTGAAAAGCCCTGGACAATCCCATGTATCTTCCCGGATGAAAGGATCACAGGCGTTGAGCAAAATAGGTCTAAACCATCCAGTTGGTGATTGTGACATTAAATTTGAGTTGACTGAAAGCGACTCCACACACATGGCATCTAGAAGTGCAGGTCTTGTTTGTGGCAATTCAAGTCTCAACCCAGTTAATGTTAAAGCACACACTCCTCTTCCTAAAATGCTGAAGGAAGAGACTAAAGAAATTAAACCAGCTAGGCAAATGAGCTACAACTCAACTGATTCTTTCATGGAGAAGCCGGTTCATGGTTTTGATGGCTTTAGAAGCTATCCCCAGACAAATGCTTGTGGCATTAAACAGGAAGTAGATGCTATATCTACAGCTCAGAACCATCAAGCATTAGATTTTGCTGCACTGGACCCAGTAGTGAACCCCTCATCACCTGATCAGGAAGAACAACCTATTGAGAGTGATGATGACATACCGTATGTTTCTGATATTGAAGCAATGATACTTGATATGGACTTGGATCCAGATGACCAAGAGTATTGCCGTGGGGAAGTCTCAAGATACCAGTATGAGAACACTAAGAGGGCTATCATAAGGCTGGAGCAGGGTTTCCATTCTTATATGCAAAGAACCATTGCAACCCATGGGGCATTTGCTGTTTTATATGGACGCCATTCAAAGCATTATATTAAGAAACCAGAGGTTCTACTCGGTAGAGCCACAGAAGATGTTACTGTTGACATTGACTTGGGAAGAGAAGGGTGCGCAAATAAAATATCTCGTCGGCAGGCAATCATAAAAATGGAAAGAGGTGGATCGTTCTCTCTAAAAAATCTTGGCAAGCGGGCCATCTTAATGAATGGCAAGGATGTAGCCCCTGGCGAGAGTGTAAGCCTTACTTGTGGCTGTTTGATTGAGATAAGGGGAATGCCTTTCATATTTGAAACTAATCAAAACTCGTGTCAAGCTGTATGCGGATAA 2679 0.4196 MDCAGAFQGCKGFTENTAISTYFFLFNAGASLESLAKGAVQFSRRFTVRELQDRWHSLLYDPVLSGEASARMIEFERSASTLPSKFNRFGNSKENKCVPGKRKAETIRSCYYALRKRICNEPFNSMDLSFLVAPSNSNCVGNGDEPVSPNYMLEDPISNHFRTQEPSLDIMHCAFPQMVTDNAAASGAGTSAHGFHAAVQNPVKEDLPIEQNSIHKEIPQILGENLPHTGNCSGIDELGEPKELLACNLFEADDLEAKPPSTFDLINSDLGNVCSEFGGNQAFDLPGSDCGASFDNLGYSSPLPGMPIWDTVEGISAPDLPVDTSLGKKDHHTEDTFALPNDGHAKINSVSGYDVVPSETKLKNSMPCDQLNNSSPDGYLAELSNSLLDFPNDELLFMDVDGKDIIDKSYYDGLNSLLLSSPTDSNQDHVPDITEPEASVGPDAYLVIPQGACAGELDNNGSIHCGDGHADCNPEAPMLSTAVDLNPQFPEMCNGVICCALNTEDPDIPCNDDVFLPNQIPLSPLSSAAQLSFHEANNPTSSAVKDFTDNQKSSERCPSLLKRELKSPGQSHVSSRMKGSQALSKIGLNHPVGDCDIKFELTESDSTHMASRSAGLVCGNSSLNPVNVKAHTPLPKMLKEETKEIKPARQMSYNSTDSFMEKPVHGFDGFRSYPQTNACGIKQEVDAISTAQNHQALDFAALDPVVNPSSPDQEEQPIESDDDIPYVSDIEAMILDMDLDPDDQEYCRGEVSRYQYENTKRAIIRLEQGFHSYMQRTIATHGAFAVLYGRHSKHYIKKPEVLLGRATEDVTVDIDLGREGCANKISRRQAIIKMERGGSFSLKNLGKRAILMNGKDVAPGESVSLTCGCLIEIRGMPFIFETNQNSCQAVCG* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1154 892 CDD FHA_MCRS1 781 883 - -
Vvi18g1154 892 SUPERFAMILY SMAD/FHA domain 783 881 IPR008984 GO:0005515
Vvi18g1154 892 ProSiteProfiles Forkhead-associated (FHA) domain profile. 801 857 IPR000253 GO:0005515
Vvi18g1154 892 Pfam FHA domain 802 873 IPR000253 GO:0005515
Vvi18g1154 892 FunFam Microspherule protein 1 744 891 - -
Vvi18g1154 892 SMART FHA_2 800 857 IPR000253 GO:0005515
Vvi18g1154 892 PANTHER MICROSPHERULE PROTEIN 1 23 888 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vvi18g1154 892 Gene3D - 755 890 - -
Vvi18g1154 892 Pfam N-terminal region of micro-spherule protein 37 77 IPR025999 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1154 Vvi-Chr18 11528060 11538881 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1154 - - vvi:100254089 1758.81