Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1149 ATGTTGACGAAATTCGAGACGAAGAGTAATAGAGTTAAGGGACTGAGTTTTCACACTAAGAGGCCATGGATCCTTGCGAGTCTTCACAGCGGTGTGATCCAGCTATGGGATTACAGAATGGGGACTCTTATTGACAGATTTGATGAGCACGATGGACCAGTGCGTGGTGTGCATTTCCACAAATCTCAGCCGCTGTTTGTTTCTGGAGGAGATGATTACAAGATCAAGGTGTGGAATTATAAGTTACATAGGTGTTTATTTACCCTTTTTGGACACCTTGATTACATCCGCACAGTTCAGTTTCACCATGAGTATCCTTGGATTGTTAGTGCAAGTGATGACCAGACTATTAGAATATGGAACTGGCAGTCCCGCACTTTAATGTCTGTATTAACCGGACATAATCATTATGTCATGTGTGCCTCATTCCATCCCAAAGAGGACCTGGTTGTATCAGCCTCCTTAGATCAGACCGTTCGTGTTTGGGATATTGGTGCCTTGAGGAAGAAAACAAGTTCCCCTGCAGATGATATCCTGCGCTTGAGTCAAATGAACACAGATTTCTTTGGTGGAGTTGACGCTGTTGTTAAGTATGTTTTGGAGGGTCATGACCGAGGAGTGAATTGGGCTTCATTCCATCCCACTCTTCCTCTTATAGTCTCAGGAGCAGATGATCGCCAAGTGAAACTTTGGAGAATGAACGACACAAAGGCTTGGGAAGTAGATACTTTGAGGGGGCACATGAATAATGTTTCATGTGTCTTCTTTCATGCAAGGCAGGATGTGATTGTGTCAAATTCAGAGGATAAAAGTATTCGTGTTTGGGATGCAACAAAGCGAACTGGTATTCAGACATTTCGAAGGGAACATGACAGGTTCTGGATTCTTACGGCACATCCTGAAATGAACCTTCTTGCAGCTGGTCATGATAGTGGCATGATTGTCTTTAAGTTGGAGAGAGAACGTCCTGCCTTTTCTGTGAGTGGTGATTGTCTGTACTATGTCAAAGACCGCTTTCTCCGCTTGTACGAATTCTCAACTCAGAAGGACGCTCAGGTGATTCCAATTCGCAGGCCTGGTTCTGCTGCCTTGAATCAAGGCCCAAGAACTCTTTCTTACAGCCCTACAGAAAATGCTGTTTTGATTTGTTCAGATGTGGACGGGGGGTCATATGAACTCTATATTGTGCCCAGAGATAGCATTGGCAGGGGGGATACGGTTCAGGATGCAAAAAGAGGGGTTGGAGGGTCAGCAGTTTTTGTGGCTCGAAACAGGTTTGCTGTACTAGAAAAGAGCAGCAACCAAGTGTTAGTCAAGAACCTTAAAAATGAGATCGTGAAGAAGAGTGTTCTTCCTGTTGCTGCTGATGCAATATTTTATGCTGGAACTGGGAACCTGCTGTGCAGGGCAGAGGATAGAGTCGTTGTCTTTGATCTCCAGCAGAGGCTTGTTCTTGGGGAACTTCAAACATCTTTCATCAGGTATGTTGTTTGGTCAAACGACATGGAGAATGTTGCTTTGCTGAGCAAACATACTATCATAATAGCCAGTAAGAAACTCGAGCACCGGTGCACACTTCATGAGACAATCCGTGTAAAGAGTGGAGCCTGGGATGATAACGGGGTCTTCATATATACAACCCTGAATCACATTAAATATTGTCTTCCTAATGGTGATAATGGTATCATCAGGACCCTCGATGTCCCAGTATACATAACAAAAGTATCTCAAAACACTGTCTATTGCTTGGATCGAGATGGAAAAAACCTTGCTGTTGCAATCGATGCAACTGAATATGTCTTCAAGCTGTCCCTCCTGAAGAAGAGATTTGACCAGGTAATGAGCATGATCAGGAGCTCGGAGCTTTGTGGGCAGGCCATGATTGCTTACCTCCAGCAAAAGGGTTTCCCAGAGGTTGCTCTTCATTTTGTGAAGGATGAAAGGACTCGTTTCAACTTGGCACTAGAAAGTGGCAATATCCAGATCGCCGTTGCTTCTGCAAAGGAAATTGATAAGAAAGATCACTGGTATAGGTTGGGAGTGGAGGCCCTCCGTCAGGGTAATGCAGGCATTGTAGAATATGCATACCAAAGGACAAAGAACTTTGAGAGGTTATCCTTCCTCTATCTTGTAACAGGTAATATAGATAAATTGTCTAAAATGCTGAAAATTGCTGAAGTAAAGAATGATGTTATGGGCCAATTTCACAATGCCCTATACTTGGGTGATATTAGGGAGCGCGTCAAGATCTTGGAAAATGCTGGCCATTTGCCCCTTGCTTACATCACTGCTGCTGTCCATGGGCTCCATGACATTGCAGAACGTCTGGCTGCTGATCTTGGAGATAATGTCCCTTCTTTGCCTGAGGGAAAATCACATTCTCTTTTGATTCCTCCAAGTCCTATCATGTGTGGTGGAGATTGGCCCTTGTTGAGGGTCATGAAAGGAATATTTGAGGGCGGTCTTGATAATGTGGGCAGGAATGCTCAGGAAGAGGATGAAGAAGCTGCAGATGCTGATTGGGGTGAGGATTTGGATATTGTTGATGGGGAAAACATGCAGAATGGAGACATTGGTATGGTGCTGGAGGATGGGGAAGTGCATGAAGAAAATGAAGAGGGAGGATGGGATCTTGAGGATCTTGAACTTCCTCCTGAGCTTGATACTCCAAAGACTAGCAGCCATGCTCGCTCATCAGTTTTTATTGCCCCAACTCCTGGTATGCCTGTAAATCTAATTTGGACCCAAAGATCATCTCTTGCTGCAGAGCATGCTGCAGCTGGCAATTTTGATACTGCAATGCGTTTGCTGAGCCGGCAGCTTGGTATAAGGAATTTTGCTCCCTTGAAACCACTATTTTTTGATCTACACATGGGTAGCCACACTTACTTGCGTGCCCTTTCTTCATCTCCGGTGATCTCAGTAGCAGTTGAGAGGGGATGGAGCGAATCCTCCAGCCCTAATGTGAGGGGTCCACCTGCACTTGTGTTCAAATTCTCACAGTTGGAAGAAAAGCTAAAGGCTGGTTACAGGGCAACAACTGCTGGGAAATTTACAGAAGCTCTACGGATTTTTCTCAGTATTCTCCATACCATTCCTCTGATTGTGGTTGAGTCAAGGAGGGAAGTAGATGAGGTCAAGGAATTGATCATCATTGTGAAAGAGTATGCTCTGGGTTTGCAGATGGAAGTTAAAAGGAGGGAAGTCAAGGATGATCCAGTTCGTCAGCAGGAACTGGCTGCTTACTTTACTCACTGTAACCTGCAATTGCCTCACCTGAGACTGGCATTGTTAAATGCCATGACTGTTTGCTATAAGGCACGCAATCTTAACACAGCAGCAAACTTTGCCCGGCGACTGTTGGAGACTAATCCCACCAATGAAAACCATGCCAAAACAGCCCGGCAAGTCCTGCAGGCTGCCGAGAGGAACATGACAGATGCATCCCCGCTGAATTATGACTTCAGAAACCCATTTGTTGTTTGTGGGGCAACCTACATCCCCATATACCGCGGACAGAAGGATGTGTCGTGCCCTTTCTGCAGTTCGCGATTTGTTCCTTCACAGGAAGGGCAGCTTTGTACTGTTTGTGATCTTGCGGTTATTGGATCTGATGCATCTGGATTGCTCTGTTCTCCTTCCCAGATAAGGTGA 3654 0.4516 MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLFGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTLMSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTSSPADDILRLSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVFFHARQDVIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILTAHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDCLYYVKDRFLRLYEFSTQKDAQVIPIRRPGSAALNQGPRTLSYSPTENAVLICSDVDGGSYELYIVPRDSIGRGDTVQDAKRGVGGSAVFVARNRFAVLEKSSNQVLVKNLKNEIVKKSVLPVAADAIFYAGTGNLLCRAEDRVVVFDLQQRLVLGELQTSFIRYVVWSNDMENVALLSKHTIIIASKKLEHRCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDNGIIRTLDVPVYITKVSQNTVYCLDRDGKNLAVAIDATEYVFKLSLLKKRFDQVMSMIRSSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDKKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLVTGNIDKLSKMLKIAEVKNDVMGQFHNALYLGDIRERVKILENAGHLPLAYITAAVHGLHDIAERLAADLGDNVPSLPEGKSHSLLIPPSPIMCGGDWPLLRVMKGIFEGGLDNVGRNAQEEDEEAADADWGEDLDIVDGENMQNGDIGMVLEDGEVHEENEEGGWDLEDLELPPELDTPKTSSHARSSVFIAPTPGMPVNLIWTQRSSLAAEHAAAGNFDTAMRLLSRQLGIRNFAPLKPLFFDLHMGSHTYLRALSSSPVISVAVERGWSESSSPNVRGPPALVFKFSQLEEKLKAGYRATTAGKFTEALRIFLSILHTIPLIVVESRREVDEVKELIIIVKEYALGLQMEVKRREVKDDPVRQQELAAYFTHCNLQLPHLRLALLNAMTVCYKARNLNTAANFARRLLETNPTNENHAKTARQVLQAAERNMTDASPLNYDFRNPFVVCGATYIPIYRGQKDVSCPFCSSRFVPSQEGQLCTVCDLAVIGSDASGLLCSPSQIR* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 88 IPR001680 GO:0005515
Vvi18g1149 1217 FunFam Coatomer subunit alpha 1 319 - -
Vvi18g1149 1217 SUPERFAMILY DPP6 N-terminal domain-like 322 595 - -
Vvi18g1149 1217 SMART WD40_4 124 163 IPR001680 GO:0005515
Vvi18g1149 1217 SMART WD40_4 193 232 IPR001680 GO:0005515
Vvi18g1149 1217 SMART WD40_4 237 276 IPR001680 GO:0005515
Vvi18g1149 1217 SMART WD40_4 279 317 IPR001680 GO:0005515
Vvi18g1149 1217 SMART WD40_4 82 121 IPR001680 GO:0005515
Vvi18g1149 1217 SMART WD40_4 2 37 IPR001680 GO:0005515
Vvi18g1149 1217 SMART WD40_4 40 79 IPR001680 GO:0005515
Vvi18g1149 1217 Gene3D - 1 319 IPR015943 GO:0005515
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Vvi18g1149 1217 PIRSF Alpha-COP 1 1213 IPR016391 GO:0006886|GO:0006888|GO:0030126
Vvi18g1149 1217 SUPERFAMILY WD40 repeat-like 4 315 IPR036322 GO:0005515
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 164 IPR001680 GO:0005515
Vvi18g1149 1217 PANTHER COATOMER 6 329 - -
Vvi18g1149 1217 Pfam WD domain, G-beta repeat 127 163 IPR001680 GO:0005515
Vvi18g1149 1217 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Vvi18g1149 1217 Pfam WD domain, G-beta repeat 84 121 IPR001680 GO:0005515
Vvi18g1149 1217 Pfam WD domain, G-beta repeat 198 231 IPR001680 GO:0005515
Vvi18g1149 1217 Pfam WD domain, G-beta repeat 45 79 IPR001680 GO:0005515
Vvi18g1149 1217 Gene3D - 640 812 - -
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Vvi18g1149 1217 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Vvi18g1149 1217 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vvi18g1149 1217 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 164 - -
Vvi18g1149 1217 CDD Coatomer_WDAD_alpha 323 776 IPR047312 -
Vvi18g1149 1217 ProSitePatterns Trp-Asp (WD) repeats signature. 150 164 IPR019775 -
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Vvi18g1149 1217 Pfam Coatomer (COPI) alpha subunit C-terminus 815 1217 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 79 - -
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Vvi18g1149 1217 CDD WD40 9 317 - -
Vvi18g1149 1217 FunFam Coatomer subunit alpha 640 812 - -
Vvi18g1149 1217 Pfam Coatomer WD associated region 341 768 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vvi18g1149 1217 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1149 Vvi-Chr18 11496786 11502152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1149 61 319 Miscellaneous Gene Families AT5G08390 26.255 1.59e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1149 K05236 - vvi:100253944 2409.79