Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1146 ATGGATCGTCTCTCTTGCTTTTGTCTCTTCCTTTTCCTTTCTTCTTTGCTGTTCTCTGCGGCTGTGTCCGTGTCTGTGTCTGATGTATCTTTCGATGAATCCGAGGATTTGTTGATCCATCAAGTTGTGTCGGATGGTGATGATCTCTTGAATGCGGAATACCAGTTTGCTGAATTCAAGACAAAGTTCGGCAAAACCTACGCCACTGCAGAAGAGCACGACCATCGCTTTAATGTTTTCAAGGCTAATTTACGCCGTGCTAAACGACACCAGTTACTTGATCCTTCAGCTGAACATGGCGTCACTCAGTTCTCTGATTTAACTCCAAGGGAGTTTCGCCAGAACTATCTTGGATTAAAGCGTCTCCAGCTCCCTGCCGACGCACAAAAGGCTCCAATCCTCCCAACGAAGGATCTCCCTACTGATTTCGATTGGAGGGATCATGGTGCCGTAACGGCAGTTAAAGATCAAGGTTATTGTGGATCATGCTGGTCGTTCAGCACAATTGGAGCCTTGGAAGGAGCACATTTTCTTGCAACTGGAAATCTTGTTAGTTTGAGTACGCAACAACTTCTGGATTGTGACACTGAGTGTGATCCAGAAGAATATGATGCTTGTGATGATGGATGCAACGGTGGGCTAATGAACAATGCATTTGAGTACATACTAAAGGCTGGGGGTGTTGCGCAGGAGGAGGACTACCCTTATACTGGAACCGATCGTGGTCTTTGCAGATTTAACAAAACTAAAATCGCTGCATCTGTTGCTAACTTCAGTGTTGTTTCCCTTGACGAAGATCAAATTGCTGCAAATTTGGTGAAGAATGGCCCTCTTGCAGTGGGTATCAATGCAGTCTTCATGCAAACATACAAGAGCGGAGTTTCATGCCCATACATTTGCTCAAGCACTTTGGATCATGGGGTTCTTTTGGTTGGATATGGTTCTGCTGGTTACTCTCCTATTCGGTTCAAGGAAAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAAAGTTGGGGAGAACAAGGGTATTACAAAATTTGCAGGGGCCATAATATATGTGGAGTAGATTCCATGGTCTCAACTGTTGCAGCTATTCACACCACCGCTTTGTAG 1116 0.4507 MDRLSCFCLFLFLSSLLFSAAVSVSVSDVSFDESEDLLIHQVVSDGDDLLNAEYQFAEFKTKFGKTYATAEEHDHRFNVFKANLRRAKRHQLLDPSAEHGVTQFSDLTPREFRQNYLGLKRLQLPADAQKAPILPTKDLPTDFDWRDHGAVTAVKDQGYCGSCWSFSTIGALEGAHFLATGNLVSLSTQQLLDCDTECDPEEYDACDDGCNGGLMNNAFEYILKAGGVAQEEDYPYTGTDRGLCRFNKTKIAASVANFSVVSLDEDQIAANLVKNGPLAVGINAVFMQTYKSGVSCPYICSSTLDHGVLLVGYGSAGYSPIRFKEKPYWIIKNSWGESWGEQGYYKICRGHNICGVDSMVSTVAAIHTTAL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1146 371 CDD Peptidase_C1A 140 363 IPR039417 -
Vvi18g1146 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 328 347 IPR025661 -
Vvi18g1146 371 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Vvi18g1146 371 PRINTS Papain cysteine protease (C1) family signature 306 316 IPR000668 GO:0006508|GO:0008234
Vvi18g1146 371 PRINTS Papain cysteine protease (C1) family signature 328 334 IPR000668 GO:0006508|GO:0008234
Vvi18g1146 371 FunFam Cysteine protease RD19A 37 364 - -
Vvi18g1146 371 Gene3D Cysteine proteinases 32 364 - -
Vvi18g1146 371 Pfam Papain family cysteine protease 139 362 IPR000668 GO:0006508|GO:0008234
Vvi18g1146 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Vvi18g1146 371 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 304 314 IPR025660 -
Vvi18g1146 371 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 53 357 IPR013128 GO:0008234
Vvi18g1146 371 SMART Inhibitor_I29_2 56 112 IPR013201 -
Vvi18g1146 371 SMART pept_c1 139 364 IPR000668 GO:0006508|GO:0008234
Vvi18g1146 371 SUPERFAMILY Cysteine proteinases 53 363 IPR038765 -
Vvi18g1146 371 Pfam Cathepsin propeptide inhibitor domain (I29) 56 112 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1146 Vvi-Chr18 11425591 11427329 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1146 K01373 - vvi:100250475 716.072