Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1144 ATGGAGGAAGAGCAGGGTAACAGTAGCAGTAGCAACTTGGAGACGGGAAAGGCGGAGAGATCGGTGTGGCTGATGAAGTGCCCCTTGGCGGTGTCCAAATCATGGCAATCCCATTCTTCCTCTGAATCACAACCTGTCGCCAAGGTCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAGCAGTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGGTAGAGTTGCAATGGAAGGGAAAGTAGAGCATAAATTTGACATGAAGCCTCACAATGAAAATATTGAGGAGTATGGCAAATTGTGCCGTGAAAGGACAAATAAATCTATGATTAAGAATAGACAAATTCAGGTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTTGGTCTGATTGCATCCAATTCTAAGGATAAGAAGAAAACTGCGCCAGTTAAGGGCTCTGACATGAAAAGAACTAGAAGGGATCGTGGGGAACTGGAAGATATTATGTTCAAGCTTTTTGAAAGGCAACCTAACTGGGCCTTAAAGCAGCTAGTCCAAGAGACAGATCAACCTGCGCAATTTTTGAAAGAGATACTGAACGAGCTCTGCGTGTACAATAAAAGAGGAACCAATCAAGGAACTTATGAGCTTAAGCCAGAATATAAGAAATCTGCTGAGGATACAGGAATGGTGCATACATAG 789 0.4411 MEEEQGNSSSSNLETGKAERSVWLMKCPLAVSKSWQSHSSSESQPVAKVVLSLDPLRSEDPSALEQFTMEMTGTGAPNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFDMKPHNENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSKDKKKTAPVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGMVHT* 263
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1144 262 SUPERFAMILY Rap30/74 interaction domains 10 120 IPR011039 GO:0006367
Vvi18g1144 262 FunFam General transcription factor IIF subunit 2 186 254 - -
Vvi18g1144 262 Gene3D - 186 253 IPR036388 -
Vvi18g1144 262 Pfam TFIIF, beta subunit HTH domain 188 251 IPR040450 -
Vvi18g1144 262 Pfam TFIIF, beta subunit N-terminus 19 134 IPR040504 -
Vvi18g1144 262 SUPERFAMILY "Winged helix" DNA-binding domain 186 252 IPR036390 -
Vvi18g1144 262 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 4 253 IPR003196 GO:0005674|GO:0006366|GO:0006367
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi18g1144 Vvi-Chr18 11391765 11406076 Dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1144 K03139 - vvi:100267659 519.235