Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1142 ATGTTGGTTGTAGTGAATGAGGTGGCAGAGAGGCTAGCGTTTTTCGCAATTGCTGTGAATATGGTGCAGTACTTGGTACTTCAGATGAACCAGTCGCTTCCAAAAGCTGCCACGCACGTGACTGATTGGATTGGAGCTGCCTATGTTCTCACAATCCTTGGTGCATTCCTAGCTGATGCTTATTTGGGCCGATTCAGAACCATCATCATCTTCTCCTCTGTTTACACAGTTGGAATGGTGTTGTTGACACTCTCTGCTTCCATAGACAGCCTACGTCCACCTCAATGCCCCACACGACCTTGCGAACCAGCATCCCGCGGCCAGACGACATTCCTTTATGGCGCACTAGCTCTTATAGCCCTCGGAACAGGAGGTATCAAGCCATGCGTCTCGTCCTTTGGTGCTGATCAATTCGACGAAGCAGATGGAGAGGAAGTGCAGAAGAAATACTCATTCTTCAATTGGTTCTTCTTTGCCATCAACATGGGGGCGCTCCTTGGTATCACCATATTGGTGTATATACAAGTAGAGAAAGGCTGGAATTGGGGTTTTGGAATCCCCACGGCAGCGATGTTCTGTTCCATCATCATCTTAGCTGCTGGCATTCCATACTATCGTTTCCAGAAACCAATGGGTAGTGCTTTTACCAGGTTTCTTCAGGTTATTGTGGCTTCAGTGAGGAACCATTTTAAAGGGGTAGAAGCGGGACATGGTGCTGAACTCTATGAAGTCAAAACTACAGAGTCAGACATCTTGGGAAATCGAAAGATCGCTCACACCGTCCAGTACAGGTTTTTGGACAAAGCAGCAGTTATAACAGATGCTGAAGCCAACACAAAGAGCCGCTGGAGGCTCTGCACAGTCACCCAAGTTGAAGAATTCAAATCCTTCGTTAGAATCCTACCAGTGTGGGCCTCCACCATAGCTCTCTCCATTTCGTTCGCCCAACTCTCAACCTTCTTCATCAGCCAAGCCCATATCATGGACAGAAAACTTGGCCCTGACTTCGTCATCCCAGCCGGCTCCATTCCCGTCTTTAGCGCCATGAACGCACTCATCCTTGTTCCCATCTACGAGAAGTGGATTGTTCCCATTCTCCGCCGCCACACTGGGCACCGCAGAGGCATCACATCTCTGCAACGAATGGGCATCGGCCTATTCGTTTCCATCTTTGCCCTGGCATCTGCCGCCTTGGTAGAAAAGAGACGGCGTGACCATTCTAGGGCATCAACCATGAGCGTTTTCTGGCTGCTTCCCCAGTTCTTCCTCATAGGCAGCGCCGAGGTCTTCACGTATGTGGGGCAACTTGAGTTCTTCTACGACGAAGCCACCGATGGGACTCGAAGCCTTAGCAGCGCAATGTTTCTGAGTGAGATTGGGATAGGAAGCTGGTTGAGCACTGCCATCGTTAAGATCATCGAAGGCACAACTGGTGGGGAAGAAAAAGGGTGGTTGAGGAATACTCTTAACACAAGCCGACTGGATTACTTCTACTGGGTATTGACTGGAATCAATGTTGCTAATTTCTTCATATATTTGTGGATTGCTGGGCTTTATAAGGAGAAAGGCGGTGCAAGTGGGAGTGTAAGAGATGAGCCCATGGCAGAGCTGGGCGGTGAAGAAGAAAGCCTTCGGACAACCTTGGTCAGCAATGGTCGTGTCGACTTTAGGGGGAGAATTGCAGATAAGCGAACAACCGGCGGATGGAAGGCGTCCCCGTTCATCATAGCGAATGAGGTGGCGGAGAGGTTAGCCTTTTTCGCAATTGCGGTGAACATGGTGTCTTACTTGGTATTTGAGATGCACCAGTCGATTCCGAAAGCTGCTACTCACGTGACTGACTGGATTGGAGCTGCCTATGTTCTCACAATCCTTGGCGCTTTCTTGGCCGATGCTTGTTTGGGCCGATTCGGAACCATCGTCATCTTCTCTTCCATTTATGCTGTTGGAATGGTGTTGTTAACACTCTCAGCCTCCATAGACAGCCTACATCCATCTCCATGCACCAAGCAACCATGCAAACCGGCATCCTATGGCCAAACAGTCTTTTTCAGTTGCGCCTTAGCCCTCATAGCCCTTGGGACCGGTGGTATCAAGCCATGCGTCTCCTCTTTCGGGGCTGATCAATTTGACGAGGCAGATGAAAATGAAGTCCACAAGAAATATGCATTCTTCAATTGGTTCTTCTTCGCCATCAACATTGGTGCACTCTTCGGTATCACTCTCTTGGTCTACATTCAAGTGGAGAAAAGCTGGAGTTGGGGTTTCGGAGTTCCAACGGCTACCATGTTTTGTTCCATCATAATCTTGGTCGCTGGTATGAGGTATTATCGTTACCAAAGGCCGATGGGAAGTGCCTTTACAAGGTTCCTTCAGGTCATTGTGGCTTCAGTCAGGAACCACTCTAGAGGGGTTGAAGTGGGACGTGAAGATGATCTATATGAAGTCAGCACTAAAGAGTCAGATATCTTCGGCGCCGTAAAGCTCCCTCATACCGCACAATACAGCTTTTTGGACAAAGCAGCAGTTATAACAGACGCTGAAGCCATCACAAAGAACCGTTGGAGGCTATGCACAGTCACCCAAGTTGAAGAATTCAAATCCTTCCTCAGAGTCCTACCAGTCTGGGCCTCCACCATAGCTCTCTCCATTTCATTCGCCCAACTCTCCACCTTCTTCATCAGCCAGGCCCTCATCATGGACAGAAAACTTGGCCCCAGTTTCGTCATTCCAGCTGGTTCCATTCCCGTGTTTAGCGCCATTACTGGCCTCATCCTTGTCCCCATCTACGAAAAATGGATCGTTCCCATTCTCCGCCGCTATACTGGGCACCGTAGAGGCATCACATCACTACAACGAATGGGCGTCGGCCTATTCTTGTCCATAATTGCTCTGGCCTCTGCTGCCTTGGTAGAAAAGAAACGGCGTGACCATTCTAAACCATTAACGGTGAGCGTGTTCTGGCTGCTTCCGCAGTACTTCCTCATGGGGAGCGCTGAAGTTTTTACGTACGTCGGACAACTTGAGTTCTTCTACGATGAAGCCACCGACGGGACTCGAAGCATTAGCAGCGCAATTTTTCTGAGTGAGATTGGGATAGGAAGCTGGTTGAGCAGTGCCATCGTTGAGATCATCGAAGGCACAACTGGCGGGGAAGAAAAAGGGTGGCTGAGGAATGATATTAACAAAAGCCGGCTGGACTATTTCTACTGGACACTGGCGGGGATCAATGGTGTTAATTTCTTGATATATTTATGGATTGCTCGGCGTTATAAGGGCAAAGGTAGTGAAAAGTGGAGTGTGAGAGATGTAGCCGTTCATGGTTGA 3327 0.4908 MLVVVNEVAERLAFFAIAVNMVQYLVLQMNQSLPKAATHVTDWIGAAYVLTILGAFLADAYLGRFRTIIIFSSVYTVGMVLLTLSASIDSLRPPQCPTRPCEPASRGQTTFLYGALALIALGTGGIKPCVSSFGADQFDEADGEEVQKKYSFFNWFFFAINMGALLGITILVYIQVEKGWNWGFGIPTAAMFCSIIILAAGIPYYRFQKPMGSAFTRFLQVIVASVRNHFKGVEAGHGAELYEVKTTESDILGNRKIAHTVQYRFLDKAAVITDAEANTKSRWRLCTVTQVEEFKSFVRILPVWASTIALSISFAQLSTFFISQAHIMDRKLGPDFVIPAGSIPVFSAMNALILVPIYEKWIVPILRRHTGHRRGITSLQRMGIGLFVSIFALASAALVEKRRRDHSRASTMSVFWLLPQFFLIGSAEVFTYVGQLEFFYDEATDGTRSLSSAMFLSEIGIGSWLSTAIVKIIEGTTGGEEKGWLRNTLNTSRLDYFYWVLTGINVANFFIYLWIAGLYKEKGGASGSVRDEPMAELGGEEESLRTTLVSNGRVDFRGRIADKRTTGGWKASPFIIANEVAERLAFFAIAVNMVSYLVFEMHQSIPKAATHVTDWIGAAYVLTILGAFLADACLGRFGTIVIFSSIYAVGMVLLTLSASIDSLHPSPCTKQPCKPASYGQTVFFSCALALIALGTGGIKPCVSSFGADQFDEADENEVHKKYAFFNWFFFAINIGALFGITLLVYIQVEKSWSWGFGVPTATMFCSIIILVAGMRYYRYQRPMGSAFTRFLQVIVASVRNHSRGVEVGREDDLYEVSTKESDIFGAVKLPHTAQYSFLDKAAVITDAEAITKNRWRLCTVTQVEEFKSFLRVLPVWASTIALSISFAQLSTFFISQALIMDRKLGPSFVIPAGSIPVFSAITGLILVPIYEKWIVPILRRYTGHRRGITSLQRMGVGLFLSIIALASAALVEKKRRDHSKPLTVSVFWLLPQYFLMGSAEVFTYVGQLEFFYDEATDGTRSISSAIFLSEIGIGSWLSSAIVEIIEGTTGGEEKGWLRNDINKSRLDYFYWTLAGINGVNFLIYLWIARRYKGKGSEKWSVRDVAVHG* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1142 1108 Pfam POT family 65 484 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1142 1108 Pfam POT family 638 1056 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi18g1142 1108 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 54 78 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1142 1108 Gene3D MFS general substrate transporter like domains 542 1099 IPR036259 -
Vvi18g1142 1108 CDD MFS_NPF 573 1090 - -
Vvi18g1142 1108 SUPERFAMILY MFS general substrate transporter 564 1095 IPR036259 -
Vvi18g1142 1108 Gene3D MFS general substrate transporter like domains 1 525 IPR036259 -
Vvi18g1142 1108 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 567 1092 - -
Vvi18g1142 1108 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 2. 725 737 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1142 1108 CDD MFS_NPF 2 516 - -
Vvi18g1142 1108 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 2. 153 165 IPR018456 GO:0006857|GO:0016020|GO:0022857
Vvi18g1142 1108 SUPERFAMILY MFS general substrate transporter 11 516 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1142 Vvi-Chr18 11374620 11381431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1142 6 522 Organic Solute Cotransporters AT3G54140 47.744 1.16e-169 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1142 K14638 - vvi:100243715 1105.51