Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1138 ATGCTACCTCTTGTTTCTCTACAGTCTTCCAACTTGCATTTCGGCACCGATACGCTCATCTCCTTCTTCTTTCCGGATCGTCTTCTCCCAAAAAGGTTTAATCAACAAAGATGCAGTTTTAGAAGTAGTGGCCAGTACACACTTAAGTGCAGACTTACCAGGGAAAAAGAATCTCCTTCCCTGAGGACCAAGGAATCTCCCTCCCCGGGTCCTTCTTCATTGATAAGGGAACCTCACAAATACTTCGATCAGGTACTTATTACCGTTCGTTCTGGAGATGGAGGCCATGGTGCAATTCTTAGCATGCCTAACCAGAGAGCTCCTTCAAAGCCACAAGGAAAACATGATAAGGATAAGATGAGGAAGAAAAGTTCGTATAAGAGGGATTTTGATGGTTCACTTATCCTTCCTATGGGTGGACATGGAGGGGGTGTGATAATTTATGCAGATGAGGGAGAAGATTCATTACTGGAGTTTCACAAGAAGAGCCGGCACAATGCAAAGCGTGGGGGAAATGTTGATGCCATGGGTGTTTTAACATCCCAATTGCATGATGGACTTGCTGCACCGACACTGCGTATTCCTGTGCCTGTAGGCACAGTTGTAAAGCGTAAGCGAGGGAAGCTTCTGGCAGATCTAGCACAACCAGGCGATGAAATTCTCGTGGCAAGGGGTGGGCAAGGAGGGATTAGCTTGATAGAAATGCCAGAGCATAAAAGGAAAAAATTGATGGCTTTAACCACAAATGTGATGAGAGATGACAATGATAAGGTTTTAGTCCTTGGTCAGCCTGGGGAGGAGGTTAGTTTGGAGTTGATACTACGGGTAGTGGCTGATGTTGGTCTTGTTGGACTTCCAAATGCTGGAAAATCTACCCTATTGGCTGCTATTACACTTGCAAAACCTGATATTGCTGATTATCCTTTCACCACATTAATGCCAAACCTTGGACGCCTTGATGGTGACCCCAGTTTAGGGGCAGGGAAGTATTCATCAGAAGCAACATTAGCAGATCTACCTGGTCTTATTGAAGGTGCTCATCTAGGGAAGGGTTTAGGTCGCAATTTCTTGAGACACTTGAGGAGGACACGGCTTTTGGTCCATGTTGTTGATGCTGCTGCTGAGGACCCTGTGAAGGACTACAGAACTGTCAAAGAAGAACTGCGGATGTACAATCCTAATTACCTTGAACGGCCATACGTTGTGGTGTTAAATAAAATTGACATTCCTAAGGCAATGGATAGACTTCCATCTTTGACTCAAGAAATAATGAAAATTGGAAGTGAGCAGATACCTTCCTCGTCTCAAAACGGCACTGAAGATGCAATTCAGTCATTGCCTTCTGACAGTGAAGGTGCAAATGTTCTTTCTTTGGATTTTCCTGATAAAGATAGGAAGGATAAAGAAATTGAGGACTACCCATGGCCCCTTGCTGTTGTTGGTGTCAGTGTTTTGAAAGGCATAAGGGTAAATGAGATGTTGAAGGAGATAAGGGCAGCTTTAAGGAAGTGCCAAGATGCCAATGGATAA 1530 0.4438 MLPLVSLQSSNLHFGTDTLISFFFPDRLLPKRFNQQRCSFRSSGQYTLKCRLTREKESPSLRTKESPSPGPSSLIREPHKYFDQVLITVRSGDGGHGAILSMPNQRAPSKPQGKHDKDKMRKKSSYKRDFDGSLILPMGGHGGGVIIYADEGEDSLLEFHKKSRHNAKRGGNVDAMGVLTSQLHDGLAAPTLRIPVPVGTVVKRKRGKLLADLAQPGDEILVARGGQGGISLIEMPEHKRKKLMALTTNVMRDDNDKVLVLGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLDGDPSLGAGKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAEDPVKDYRTVKEELRMYNPNYLERPYVVVLNKIDIPKAMDRLPSLTQEIMKIGSEQIPSSSQNGTEDAIQSLPSDSEGANVLSLDFPDKDRKDKEIEDYPWPLAVVGVSVLKGIRVNEMLKEIRAALRKCQDANG* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1138 509 Gene3D GTP1/OBG domain 80 276 IPR036726 -
Vvi18g1138 509 Pfam 50S ribosome-binding GTPase 279 406 IPR006073 GO:0005525
Vvi18g1138 509 PRINTS GTP1/OBG GTP-binding protein family signature 353 371 IPR006073 GO:0005525
Vvi18g1138 509 PRINTS GTP1/OBG GTP-binding protein family signature 301 319 IPR006073 GO:0005525
Vvi18g1138 509 PRINTS GTP1/OBG GTP-binding protein family signature 280 300 IPR006073 GO:0005525
Vvi18g1138 509 PRINTS GTP1/OBG GTP-binding protein family signature 336 351 IPR006073 GO:0005525
Vvi18g1138 509 MobiDBLite consensus disorder prediction 110 126 - -
Vvi18g1138 509 CDD Obg 278 416 IPR031167 GO:0005525
Vvi18g1138 509 ProSiteProfiles Obg domain profile. 79 277 IPR006169 -
Vvi18g1138 509 Gene3D - 278 501 IPR027417 -
Vvi18g1138 509 MobiDBLite consensus disorder prediction 96 126 - -
Vvi18g1138 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 439 IPR027417 -
Vvi18g1138 509 ProSitePatterns GTP1/OBG family signature. 338 351 IPR006074 GO:0005525
Vvi18g1138 509 MobiDBLite consensus disorder prediction 429 460 - -
Vvi18g1138 509 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 278 502 IPR031167 GO:0005525
Vvi18g1138 509 MobiDBLite consensus disorder prediction 52 76 - -
Vvi18g1138 509 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 77 498 IPR045086 GO:0003924|GO:0005525
Vvi18g1138 509 NCBIfam small GTP-binding protein domain 279 429 IPR005225 GO:0005525
Vvi18g1138 509 MobiDBLite consensus disorder prediction 429 452 - -
Vvi18g1138 509 Pfam GTP1/OBG 139 275 IPR006169 -
Vvi18g1138 509 SUPERFAMILY Obg GTP-binding protein N-terminal domain 81 243 IPR036726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1138 Vvi-Chr18 11338330 11345580 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1138 - - vvi:100259096 993.03