Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1134 ATGGGGAGTTGGTTATGGGCAGTTTCGATTCTCATTCTCGCGGTTCATTCTTCCGTTTCTGAAGCTTCATCCACAGCAGATCTCTTCGAAGCTTGGTGCGAGCAGTATGGCAAGACGTACTCTTCAGAAGAAGAGAAGGCGTCGAGGCTCAAGGTGTTTGAAGAAAATCATGCGTTTGTTACTCAGCACAATAGTATGGCTAATGCTTCCTACACACTAGCTCTCAACGCCTTCGCTGATCTCACGCATCACGAGTTCAAGGCCTCTCGCTTGGGCTTCTCCCCCGGGAGGGCCCAATCGATTCGGTCCGTTGGTACACCGGTTCAAGAGCTCCATGTTCCGCCCGCGGTGGATTGGAGGAAGAGTGGAGCGGTCACAGGTGTGAAAGATCAGGGGAATTGTGGTGGTTGTTGGTCATTCTCAACCACGGGAGCTATTGAAGGCATTAATAAGATTGTAACTGGATCTCTTGTTAGCCTATCTGAACAAGAGTTAGTGGATTGTGACAGATCTTACAATAGTGGCTGTGAGGGTGGACTCATGGACTATGCATATCAGTTTGTTATAAAAAACCAGGGGATTGACAGCGAGGCAGATTACCCATATGTAGGTATGGACAAGCCCTGCAATAAAGAAAAGTTGAAGAAGCATATTGTAACCATTGATGGTTACACAGACATACCCCCAAATGATGAGAAACAGCTACTACAAGTAGTGGCTAAACAACCTGTAAGTGTAGGCATATGTGGCAGTGAGAAAACATTTCAACTCTATTCAAAGGGGGTCTACACTGGGCCATGTTCAAGTACTCTGGATCATGCTGTATTGATTGTGGGTTATGGTACGGAAGATGGTGTTGATTTTTGGATTGTAAAGAATTCATGGGGAGAACATTGGGGAATGCGTGGTTATATTCACATGCTACGTAACAATGGTACAGCAGAAGGCATCTGTGGTATCAACATGTTAGCTTCATATCCAGCCAAGACTAGCCCAAATCCACCTCCACCTCCCACCCCAGGTCCCACTAAATGTGATTTTTTTAGCTCTTGTTCAGAAGGTGAAACCTGCTGTTGTAGCTGGCGTTTTATTGGGGTATGCTTATCATGGAACTGTTGTACGGCGAAATCTGCTGTGTGTTGTGATAACAATAATTACTGCTGCCCTGCTAGTCATCCAATTTGCGATACAAAAAGGAATCGGTGCCTCAAGCCAGCAGGGAATGGCACCGGAGTGGAAGTGCTGAAGAGAAGAGGCTCTTCTGTGAAGTTTGGTGGCTGGAGTTCCATTAATGATGCGTGGAATCTATAA 1311 0.4607 MGSWLWAVSILILAVHSSVSEASSTADLFEAWCEQYGKTYSSEEEKASRLKVFEENHAFVTQHNSMANASYTLALNAFADLTHHEFKASRLGFSPGRAQSIRSVGTPVQELHVPPAVDWRKSGAVTGVKDQGNCGGCWSFSTTGAIEGINKIVTGSLVSLSEQELVDCDRSYNSGCEGGLMDYAYQFVIKNQGIDSEADYPYVGMDKPCNKEKLKKHIVTIDGYTDIPPNDEKQLLQVVAKQPVSVGICGSEKTFQLYSKGVYTGPCSSTLDHAVLIVGYGTEDGVDFWIVKNSWGEHWGMRGYIHMLRNNGTAEGICGINMLASYPAKTSPNPPPPPTPGPTKCDFFSSCSEGETCCCSWRFIGVCLSWNCCTAKSAVCCDNNNYCCPASHPICDTKRNRCLKPAGNGTGVEVLKRRGSSVKFGGWSSINDAWNL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1134 436 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 21 322 IPR013128 GO:0008234
Vvi18g1134 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 271 281 IPR025660 -
Vvi18g1134 436 Pfam Papain family cysteine protease 113 327 IPR000668 GO:0006508|GO:0008234
Vvi18g1134 436 SMART Inhibitor_I29_2 29 86 IPR013201 -
Vvi18g1134 436 SUPERFAMILY Cysteine proteinases 26 327 IPR038765 -
Vvi18g1134 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 131 142 IPR000169 -
Vvi18g1134 436 Pfam Granulin 356 403 IPR000118 -
Vvi18g1134 436 Gene3D Granulin 343 409 IPR037277 -
Vvi18g1134 436 SUPERFAMILY Granulin repeat 342 374 - -
Vvi18g1134 436 CDD Peptidase_C1A 114 327 IPR039417 -
Vvi18g1134 436 PRINTS Papain cysteine protease (C1) family signature 288 294 IPR000668 GO:0006508|GO:0008234
Vvi18g1134 436 PRINTS Papain cysteine protease (C1) family signature 131 146 IPR000668 GO:0006508|GO:0008234
Vvi18g1134 436 PRINTS Papain cysteine protease (C1) family signature 273 283 IPR000668 GO:0006508|GO:0008234
Vvi18g1134 436 FunFam cysteine protease XCP2 8 330 - -
Vvi18g1134 436 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Vvi18g1134 436 Gene3D Cysteine proteinases 10 330 - -
Vvi18g1134 436 SMART pept_c1 113 328 IPR000668 GO:0006508|GO:0008234
Vvi18g1134 436 SMART GRAN_2 345 402 IPR000118 -
Vvi18g1134 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 288 307 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1134 Vvi-Chr18 11311551 11316009 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1134 - - vvi:100243729 903.664