Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1132 ATGGCGGAAGAGGGACAAGTTGTCGGTTGCCACAGTGTGGAATCGTGGAAGGAGCAATTCCAGCATGGAATAGAGTCCAAGAAACTGGTGGTGGTGGATTTCACTGCTTCATGGTGTGGGCCATGTCGTGTCATTAGCCCATTTCTGGCAGAGCTTGCCAAGAAGATGCCTAATGTCATATTTCTCAAGGTGGATGTGGATGAATTGGAGACTGTTGCTAAGGAGTGGGAAGTGGAGGCCATGCCAACCTTTCTGTTCCTGAAAGAAGGAAACGTAGTGGACAAGGTTGTGGGTGCAAAAAGAGAAGAACTGGTGCAGAAGACAGAGAAGCATGCAACTGCTTGA 345 0.487 MAEEGQVVGCHSVESWKEQFQHGIESKKLVVVDFTASWCGPCRVISPFLAELAKKMPNVIFLKVDVDELETVAKEWEVEAMPTFLFLKEGNVVDKVVGAKREELVQKTEKHATA* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1132 114 PIRSF Thioredoxin 10 113 IPR005746 GO:0015035
Vvi18g1132 114 PRINTS Thioredoxin family signature 77 88 - -
Vvi18g1132 114 PRINTS Thioredoxin family signature 38 47 - -
Vvi18g1132 114 PRINTS Thioredoxin family signature 30 38 - -
Vvi18g1132 114 FunFam Thioredoxin 6 113 - -
Vvi18g1132 114 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Vvi18g1132 114 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Vvi18g1132 114 SUPERFAMILY Thioredoxin-like 17 112 IPR036249 -
Vvi18g1132 114 PANTHER THIOREDOXIN 7 110 - -
Vvi18g1132 114 CDD TRX_family 18 107 - -
Vvi18g1132 114 Gene3D Glutaredoxin 1 114 - -
Vvi18g1132 114 Pfam Thioredoxin 16 107 IPR013766 -
Vvi18g1132 114 NCBIfam thioredoxin 18 107 IPR005746 GO:0015035
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1132 Vvi-Chr18 11297179 11299637 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1132 K03671 - vvi:100250566 230.335