Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1131 ATGCAAAAGAACCTCAGTAGGGCAGGGCCTACCCAATATTTTGGAGCCAAAGATGACTGCAAAATTGAATGGGTTCGTACGAACATAGATTGGATTACATACCACCAAATTTTGCAATTCAATATAGCCAACAATGAAGAACATAGCCGACAAAATCTAATATTTCTTTATCCTAGAGAAATACCTACTGCAGAAAACATTGGTAACAATGAAAACAAGGTGGTGGTGGATTTCACTGCTTCATGGTGTGGGCCATGTCGTGTCATTAGCCCATTTCTGGCAGAGCTTGCCAAGAAGATGCCTAATGTCATATTTCTCAAGGTGGATGTGGATGAATTGGAGACTGTTGCTAAGGAGTGGGAAGTGGAGGCCATGCCAACCTTTCTGTTCCTGAAAGAAGGAAACGTAGTGGACAAGGTTGTGGGTGCAAAAAGAGAAGAACTGGTGCAGAAGACAGAGAAGCATGCAACTGCTTGA 477 0.4277 MQKNLSRAGPTQYFGAKDDCKIEWVRTNIDWITYHQILQFNIANNEEHSRQNLIFLYPREIPTAENIGNNENKVVVDFTASWCGPCRVISPFLAELAKKMPNVIFLKVDVDELETVAKEWEVEAMPTFLFLKEGNVVDKVVGAKREELVQKTEKHATA* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1131 158 FunFam Thioredoxin 60 157 - -
Vvi18g1131 158 ProSiteProfiles Thioredoxin domain profile. 53 157 IPR013766 -
Vvi18g1131 158 PANTHER THIOREDOXIN 71 154 - -
Vvi18g1131 158 ProSitePatterns Thioredoxin family active site. 75 93 IPR017937 -
Vvi18g1131 158 Gene3D Glutaredoxin 37 158 - -
Vvi18g1131 158 PRINTS Thioredoxin family signature 82 91 - -
Vvi18g1131 158 PRINTS Thioredoxin family signature 121 132 - -
Vvi18g1131 158 PRINTS Thioredoxin family signature 74 82 - -
Vvi18g1131 158 SUPERFAMILY Thioredoxin-like 35 155 IPR036249 -
Vvi18g1131 158 CDD TRX_family 65 151 - -
Vvi18g1131 158 Pfam Thioredoxin 65 151 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1131 Vvi-Chr18 11293740 11296751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1131 K03671 - vvi:100266040 173.326