Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1130 ATGGAGACTAGCTCAGTCTCCAAGCTGTTCATCTTCTTCTTCGTGCCATTGATGTTTCTGCATTCTCAGCTGATCCAATGTAGCGTTACCTACGATAAGAAGGCCATTGTCATCAATGGGCAAAGGAGAATCCTCATCTCCGGCTCTATACACTACCCCAGAAGCACCCCTGATATGTGGGAAGATCTTATACGGAAGGCTAAAGATGGAGGCTTAGATGTCATCGACACCTATATTTTCTGGAATGTTCATGAGCCTTCTCCTGGGAATTATAATTTTGAGGGGAGATACGATCTGGTACGGTTCATTAAGACTGTGCAGAAAGTAGGGCTCTATGTTCATCTCCGGATTGGACCCTATGTTTGTGCAGAATGGAACTTCGGGGGATTTCCTGTTTGGTTGAAGTTTGTTCCTGGTATCAGCTTCAGAACAAATAATGAACCTTTCAAGATGGCAATGCAAGGGTTCACTCAGAAGATTGTCCACATGATGAAGAGTGAAAACCTGTTTGCATCACAGGGTGGGCCCATCATCCTTTCTCAGATTGAGAATGAGTACGGACCAGAGAGTAGGGAATTAGGAGCTGCTGGTCATGCATACATCAACTGGGCTGCAAAAATGGCTGTTGGATTGGACACAGGAGTCCCATGGGTGATGTGCAAAGAAGATGATGCCCCAGATCCTGTGATAAATGCATGTAATGGCTTTTACTGTGATGCTTTCTCTCCAAACAAACCTTACAAGCCCAGAATATGGACAGAGGCTTGGAGTGGCTGGTTTACAGAGTTTGGTGGCACAATTCACCGGCGACCAGTTCAAGATTTGGCATTTGGGGTTGCTCGTTTCATACAAAATGGTGGCTCATTTGTTAATTACTATATGTACCATGGAGGAACCAATTTTGGACGCTCTGCTGGAGGCCCTTTCATTACAACCAGTTATGATTATGATGCTCCAATTGATGAATATGGTTTGATCAGACAACCAAAATATGGTCATTTGAAGGAGCTCCATAAAGCAATTAAGTTATGTGAACACGCTGTAGTTTCTGCGGACCCTACTGTTATCTCATTGGGAAGCTATCAACAGGCCCATGTATTCTCTTCAGGGCGAGGCAACTGTGCAGCTTTTCTCTCCAACTACAATCCCAAGTCATCTGCAAGGGTGATTTTCAATAATGTGCACTATGATTTGCCGGCTTGGTCCATTAGCATCCTTCCTGATTGCAGAACCGTAGTCTTTAATACTGCAAGAGTTGGAGTTCAAACTTCACATATGCGAATGTTTCCAACCAACTCTAAGTTGCACTCTTGGGAAACTTATGGTGAAGACATTTCTTCTCTGGGGAGCAGTGGAACAATGACTGCTGGCGGACTCCTGGAGCAGATAAATATCACCAGAGATTCCACTGACTATCTGTGGTACATGACCAGTGTCAACATTGACTCATCGGAATCATTTCTACGAAGAGGTCAAACTCCAACCCTCACTGTGCAATCTAAAGGCCACGCTGTTCATGTCTTTATCAATGGACAGTATTCAGGATCAGCATACGGAACCAGGGAGAACAGGAAATTCACATATACCGGAGCAGCCAATCTACATGCAGGAACAAATAGAATTGCCCTGCTTAGCATAGCTGTTGGACTACCGAATGTTGGATTGCATTTTGAGACATGGAAGACAGGAATCCTAGGTCCAGTTTTGCTTCATGGTATTGACCAAGGAAAGAGGGATTTATCATGGCAGAAGTGGTCTTACCAGGTTGGCCTGAAAGGAGAGGCAATGAATCTGGTCTCCCCAAATGGAGTCTCAGCAGTTGAGTGGGTTCGAGGGTCACTTGCTGCCCAAGGTCAGCAGCCTTTAAAATGGTATAAGGCTTATTTCAATGCACCTGAAGGAGATGAGCCATTGGCTTTGGACATGCGGAGCATGGGAAAGGGTCAAGTTTGGATCAATGGGCAGAGCATTGGAAGATATTGGATGGCTTACGCAAAAGGTGACTGCAATGTTTGTAGCTACTCTGGAACATACCGACCCCCAAAGTGTCAGCATGGTTGCGGTCATCCAACCCAAAGATGGTATCATGTTCCAAGGTCTTGGTTGAAGCCAACACAAAATTTGTTGATAATTTTTGAAGAACTTGGTGGTGATGCATCAAAGATAGCTCTTATGAAGAGAGCAATGAAGAGTGTTTGTGCCGATGCTAATGAACACCACCCAACTCTAGAGAATTGGCATACTGAAAGCCCTAGCGAATCAGAAGAACTTCATGAGGCCAGTGTGCACCTGCAATGTGCCCCAGGGCAGTCCATATCAACCATTATGTTTGCAAGTTTTGGAACTCCTTCTGGAACCTGTGGAAGTTTCCAGAAAGGAACCTGCCATGCACCAAACTCTCAAGCCATCTTAGAGAAGGTACTTATTCCCAACTTCAACCAGTTCTATACATATGCATACTTGCATTATCGAAAACTTAAATTGTGA 2487 0.4459 METSSVSKLFIFFFVPLMFLHSQLIQCSVTYDKKAIVINGQRRILISGSIHYPRSTPDMWEDLIRKAKDGGLDVIDTYIFWNVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYVHLRIGPYVCAEWNFGGFPVWLKFVPGISFRTNNEPFKMAMQGFTQKIVHMMKSENLFASQGGPIILSQIENEYGPESRELGAAGHAYINWAAKMAVGLDTGVPWVMCKEDDAPDPVINACNGFYCDAFSPNKPYKPRIWTEAWSGWFTEFGGTIHRRPVQDLAFGVARFIQNGGSFVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYGHLKELHKAIKLCEHAVVSADPTVISLGSYQQAHVFSSGRGNCAAFLSNYNPKSSARVIFNNVHYDLPAWSISILPDCRTVVFNTARVGVQTSHMRMFPTNSKLHSWETYGEDISSLGSSGTMTAGGLLEQINITRDSTDYLWYMTSVNIDSSESFLRRGQTPTLTVQSKGHAVHVFINGQYSGSAYGTRENRKFTYTGAANLHAGTNRIALLSIAVGLPNVGLHFETWKTGILGPVLLHGIDQGKRDLSWQKWSYQVGLKGEAMNLVSPNGVSAVEWVRGSLAAQGQQPLKWYKAYFNAPEGDEPLALDMRSMGKGQVWINGQSIGRYWMAYAKGDCNVCSYSGTYRPPKCQHGCGHPTQRWYHVPRSWLKPTQNLLIIFEELGGDASKIALMKRAMKSVCADANEHHPTLENWHTESPSESEELHEASVHLQCAPGQSISTIMFASFGTPSGTCGSFQKGTCHAPNSQAILEKVLIPNFNQFYTYAYLHYRKLKL* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1130 828 CDD Gal_Rha_Lectin_BGal 754 806 - -
Vvi18g1130 828 Gene3D Glycosidases 24 344 - -
Vvi18g1130 828 FunFam Beta-galactosidase 592 733 - -
Vvi18g1130 828 FunFam Beta-galactosidase 293 421 - -
Vvi18g1130 828 Pfam Beta-sandwich domain in beta galactosidase 349 419 IPR041392 -
Vvi18g1130 828 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
Vvi18g1130 828 SUPERFAMILY Galactose-binding domain-like 403 574 IPR008979 -
Vvi18g1130 828 SUPERFAMILY (Trans)glycosidases 28 345 IPR017853 -
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 647 663 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 620 634 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 PRINTS Glycosyl hydrolase family 35 signature 308 324 IPR001944 GO:0004553|GO:0005975
Vvi18g1130 828 Gene3D - 604 733 - -
Vvi18g1130 828 Gene3D - 446 586 - -
Vvi18g1130 828 ProSiteProfiles SUEL-type lectin domain profile. 756 806 IPR000922 GO:0030246
Vvi18g1130 828 FunFam Beta-galactosidase 24 344 - -
Vvi18g1130 828 SUPERFAMILY Galactose-binding domain-like 583 749 IPR008979 -
Vvi18g1130 828 FunFam Beta-galactosidase 447 584 - -
Vvi18g1130 828 Pfam Glycosyl hydrolases family 35 36 340 IPR031330 -
Vvi18g1130 828 PANTHER BETA-GALACTOSIDASE RELATED 24 749 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1130 Vvi-Chr18 11286715 11292519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1130 5 808 Glycoside Hydrolase AT4G36360 72.015 0.0 1286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1130 - - vvi:100232901 1690.63