Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1129 ATGGAAAATTTAATCCTCCCCTGCAAATCAAGACCCCCTTTAGCAACTCCCTCCAAGCAAGGAACCTCATTCGAGTGTTCATCAAGAATCATTCAACCCAGAGTTTCTTTTACCAAAATCCACCAACCATTGACACCAAAACTAAAACCAAAAGTTACAGACGCCCATTTGAATCACCTCTGCAAAAATGGACGGCTCGCCGATGCCATAGCCTGTCTTGACGCCATTGCACAGGGTGGGTCAAACGTAAAACCCAATACTTACATGCAGTTACTACAGTCTTGCATTGATCAGGGTTCAGCCGAGCTAGGTCGTAAGCTACATGCTCGAATTGGTTTGCTTGAGGAGATGAATCCATTTGTTGAGACTAAATTAGTGAGCATGTATGCGAAATGTGGGAGTTTGGGAGAAGCGAGAAAGGTGTTCGGGGAAATGCGTGAGAGAAATTTGTATGCGTGGTCAGCAATGATTGGTGCGTATTCTAGAGAGCAAATGTGGAGAGAAGTTGTGCAGCATTTCTTTTTTATGATGGAAGATGGTATCGTTCCTGACGAGTTTCTGCTCCCGAAGATACTTCAAGCTTGTGGGAATTGTGGGGATGCTGAGACTGGGAAATTGATACATTCGCTGGTAATTCGGTGTGGCATGAATTTCAATATCCGTGTTAGTAATTCAATTTTGGCCGTTTATGCGAAATGTGGTAGGCTGAGTTGTGCAAGAAGGTTTTTTGAGAACATGGATTACAGGGATAGAGTGTCTTGGAATTCGATCATAACTGGATATTGTCAAAAAGGTGAGCTTGAAAAATCCCACCAACTGTTTGAGAAGATGCAAGAAGAAGGGATTGAACCAGGATTGGTGACTTGGAACATATTAATAAATAGTTATAGCCAGTCTGGGAAATGTGATGATGCAATGGAACTGATGAAGAAGATGGAGAGTTTCAGAATAGTTCCTGATGTCTTTACATGGACGTCTATGATTTCGGGGTTTGCTCAAAACAATAGGAGAAGTCAGGCATTGGAACTGTTCCGGGAGATGCTTTTGGCAGGGATTGAACCAAATGGGGTTACAGTTACGAGTGGAATCTCAGCATGTGCATCTCTCAAAGCTCTAAAGAAAGGGATGGAACTCCATTCTGTTGCAGTTAAGATAGGTTGTGTTGAAGATCTATTGGTGGGAAATTCACTAATCGACATGTATTCCAAGTCTGGGGAGCTTGAGGATGCTAGGCGGGTCTTTGATATGATCTTAAAAAAAGATGTTTACACTTGGAATTCAATGATTGGAGGGTACTGCCAAGCTGGCTATTGTGGGAAAGCCTATGATCTCTTTATTAAGATGCATGAATCTGATGTACCACCTAATGTCGTAACGTGGAATGCAATGATCTCAGGCTATATACAGAATGGAGATGAGGATCAAGCTATGGATCTTTTCCATAGGATGGAAAAAGATGGGCTAATTAAGCGGGACACAGCATCATGGAATTCTCTTATTGCAGGTTACCTGCAGAATGGACACAAAAACAAGGCATTGGGGATATTTCGACAAATGCAGTCTTTCTGTATTAGACCCAATTCAGTCACCATGCTGAGTATCTTACCTGCATGTGCTAATTTAGTAGCAGCCAAAAAGGTAAAGGAGATCCATGGTTGTATATTGCGAAGAAATTTAGGGTCTGAACTATCTGTTGCCAATTGTCTCATAGACACTTATGCCAAATCAGGGAATATTGTTTATGCACAAACTATATTTCAAGGCATTTCATCCAAAGATATCATCAGCTGGAACTCGCTAATTGCTGGTTATGTTTTGCATGGTTGTTCAGATTCTGCACTTGATCTCTTTGATCAGATGACAAAGATGGGAGTTAAACCAAGCAGAGGTACTTTTTTGAGTATCATCTATGCATTCAGTCTCTCTGGAATGGTGGACAAGGGGAAGCAAGTTTTCTCTAGCATGATGGAAGACTATCAAATTTTACCAGGTTTGGAACATCATTCAGCTATGATAGATTTATTGGGCCGCTCAGGTAAGCTTGGAGAAGCAATTGAATTCATTGAAGATATGGCCATAGAACCAGACTCCTGCATCTGGGCTGCCTTACTAACTGCCAGTAAAATTCATGGGAATATTGGGCTGGCAATCCGTGCAGGGGAATGTTTGCTAGAATTGGAACCATCGAATTTTTCAATTCACCAGCAAATTTTACAGATGTATGCTTTATCTGGAAAGTTTGAGGATAGTGAAAAAAGGAGTGAGACCAAACAACCTCTTGGGTGTAGCTGGATTGAAGCTAAAAACATAGTGCACACTTTTGTTGCTGATGACCGGTCTAGACCATATTTTGACTTTCTACATTCTTGGATAGAAAATGTGGCAAGAAAAGTGAAGGCACCTGATCAGCACGATCGACTATTCATTGAGGAAGAAGAAAAGGAAGAGATTGGTGGGGTCCACAGTGAAAAACTTGCATTAGCTTTTGCCCTAATTGACCCTTCTTGTGCACCCCGAAGTGTTCGGATTGTGAAGAACCTGAGAATGTGTGGAGATTGCCATGGGACAGCCAAATTTCTCTCCATGTTGTATAGCTGTGAAATATACCTGAGTGATTCAAAGTGCTTGCACTGGTTTAAAAATGGACGTTGTTCTTGTGGCGATTATTGGTAA 2673 0.416 MENLILPCKSRPPLATPSKQGTSFECSSRIIQPRVSFTKIHQPLTPKLKPKVTDAHLNHLCKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGKFEDSEKRSETKQPLGCSWIEAKNIVHTFVADDRSRPYFDFLHSWIENVARKVKAPDQHDRLFIEEEEKEEIGGVHSEKLALAFALIDPSCAPRSVRIVKNLRMCGDCHGTAKFLSMLYSCEIYLSDSKCLHWFKNGRCSCGDYW* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1129 890 Gene3D Tetratricopeptide repeat domain 330 484 IPR011990 GO:0005515
Vvi18g1129 890 Gene3D Tetratricopeptide repeat domain 564 775 IPR011990 GO:0005515
Vvi18g1129 890 Gene3D Tetratricopeptide repeat domain 51 212 IPR011990 GO:0005515
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vvi18g1129 890 FunFam Pentatricopeptide repeat-containing protein At1g19720 213 322 - -
Vvi18g1129 890 SUPERFAMILY HCP-like 261 518 - -
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Vvi18g1129 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 59 184 IPR046960 GO:0003723|GO:0009451
Vvi18g1129 890 FunFam Pentatricopeptide repeat-containing protein 334 462 - -
Vvi18g1129 890 FunFam Pentatricopeptide repeat-containing protein At1g19720 564 775 - -
Vvi18g1129 890 SUPERFAMILY TPR-like 400 773 IPR011990 GO:0005515
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vvi18g1129 890 Pfam DYW family of nucleic acid deaminases 809 890 IPR032867 GO:0008270
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 593 627 IPR002885 -
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Vvi18g1129 890 Gene3D Tetratricopeptide repeat domain 213 318 IPR011990 GO:0005515
Vvi18g1129 890 Gene3D Tetratricopeptide repeat domain 485 554 IPR011990 GO:0005515
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 420 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat family 492 539 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat family 284 332 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat family 592 639 IPR002885 -
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Vvi18g1129 890 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 54 203 - -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 495 527 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 124 150 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 252 284 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 395 422 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 595 628 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 287 321 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 423 457 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 458 488 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Vvi18g1129 890 NCBIfam pentatricopeptide repeat 151 185 IPR002885 -
Vvi18g1129 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 252 282 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 669 691 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 423 452 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 224 247 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 458 488 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 395 421 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 152 181 IPR002885 -
Vvi18g1129 890 Pfam PPR repeat 125 149 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1129 Vvi-Chr18 11275706 11278396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1129 167 890 Glycoside Hydrolase AT3G49170 31.098 2.14e-114 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1129 - - vvi:100255764 1790.39